API for compgenomics/MeTDiff
Differential analysis for MeRIP-seq data
| Global functions | |
|---|---|
| .bed2grangeslist | Source code |
| .betabinomial.hmm | Source code |
| .betabinomial.lh | Source code |
| .betabinomial.vit | Source code |
| .diff.call.module | Source code |
| .divide.anno.into.batches | Source code |
| .divide.anno.into.batches.small | Source code |
| .get.bam.chrs | Source code |
| .get.bam.read.length | Source code |
| .get.block.from.rna.peak | Source code |
| .get.check.points | Source code |
| .get.check.points.reads.count | Source code |
| .get.gene.anno | Source code |
| .get.peak.from.loci | Source code |
| .get.peak.reads.count | Source code |
| .get.reads.count | Source code |
| .get.sample.id | Source code |
| .get.table.peak.result | Source code |
| .help.digamma | Source code |
| .help.factorial | Source code |
| .help.initial | Source code |
| .help.minorm | Source code |
| .help.postprob | Source code |
| .help.trigamma | Source code |
| .metpeak.process | Source code |
| .peak.call.module | Source code |
| .read.gtf | Source code |
| .remove.local.anomalities | Source code |
| .report.diff.peak.based.on.result | Source code |
| MeTDiff | Man page |
| MeTDiff-package | Man page |
| metdiff | Man page Source code |
