Files in cpanse/protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
.Rbuildignore
.Rinstignore
.gitattributes
.github/workflows/r.yml
DESCRIPTION
LICENSE
NAMESPACE
R/PTM_MarkerFinder.R
R/RcppExports.R
R/aa2mass.R
R/centroid.R
R/comet.R
R/de_novo.R
R/deisotoper.R
R/findNN.R
R/fragmentIon.R
R/genMod.R
R/iTRAQ2GroupAnalysis.R
R/lcmsmap.R
R/mascot.R
R/mdp.R
R/parentIonMass.R
R/peakplot.R
R/pepxml.R
R/pgImporter.R
R/pgLFQ.R
R/pp.R
R/protViz-package.R
R/psm.R
R/queue.R
R/ssrc.R
R/sysdata.rda
R/zzz.R
README.md
data/AA.RData
data/ADPR.RData
data/HexNAc.RData
data/averagine.RData
data/datalist
data/fetuinLFQ.RData
data/iRTpeptides.RData
data/iTRAQ.RData
data/msms.RData
data/pgLFQfeature.RData
data/pgLFQprot.RData
data/pressureProfile.RData
demo/00Index
demo/PTM_MarkerFinder.R
demo/peakplot.R
demo/pressureProfile.R
demo/quantification.R
exec/protViz_annotateSpecLib_with_protID.py
exec/protViz_annotateSpecLib_with_protID_split.bash
exec/protViz_bibliospec2RData.py
exec/protViz_dat2R.bash
exec/protViz_extractPressureProfiles.bash
exec/protViz_fun.bash
exec/protViz_mascot2XML.bash
exec/protViz_mascotDat2RData.pl
exec/protViz_mgf2RData.pl
inst/CITATION
inst/Dockerfile
inst/NEWS.Rd
inst/extdata/P12763.fasta
inst/shiny-examples/PTM_MarkerFinder/ptm_marker_finder.R
inst/shiny-examples/PTM_MarkerFinder/server.R
inst/shiny-examples/PTM_MarkerFinder/ui.R
inst/shiny-examples/peakplot/server.R
inst/shiny-examples/peakplot/ui.R
man/AA.Rd
man/ADPR.Rd
man/HexNAc.Rd
man/PTM_MarkerFinder.Rd
man/PTM_MarkerFinder_util.Rd
man/aa2mass.Rd
man/assignPlatePosition.Rd
man/averagine.Rd
man/blockRandom.Rd
man/centroid.Rd
man/de_novo.Rd
man/deisotoper.Rd
man/fasta.Rd
man/fetuinLFQ.Rd
man/findNN.Rd
man/fragmentIons.Rd
man/genMod.Rd
man/iRTpeptides.Rd
man/iTRAQ.Rd
man/iTRAQ2GroupAnalysis.Rd
man/insertSamples.Rd
man/lcmsmap.Rd
man/mascot.rd
man/mdp.Rd
man/msms.Rd
man/parentIonMass.Rd
man/peakplot.Rd
man/pgImporter.Rd
man/pgLFQaov.Rd
man/pgLFQfeature.Rd
man/pgLFQprot.Rd
man/pgLFQtNpq.Rd
man/ppp.Rd
man/pps.Rd
man/pressureProfile.Rd
man/psm.Rd
man/psmSet.Rd
man/ssrc.Rd
src/Makevars
src/RcppExports.cpp
src/aa2mass.cpp
src/base/chemistry/iisotopeenvelope.h
src/base/ms/deisotoper.h
src/computeFragmentIons.c
src/computeParentIonMass.c
src/deisotoper.cpp
src/fasta.cpp
src/fcat.c
src/findNN.c
src/findNN_.cpp
src/protMass.c
src/protViz_init.c
src/rcppdeisotoperenvelope.h
src/tryptic-digest.c
tests/testthat.R
tests/testthat/test-aa2mass.R
tests/testthat/test-centroid.R
tests/testthat/test-deisotoper.R
tests/testthat/test-fasta.R
tests/testthat/test-findNN_.R
tests/testthat/test-fragmentIon.R
tests/testthat/test-psm.R
tests/testthat/test-ssrc.R
vignettes/ADP-Ribosylated-peptides.Rnw
vignettes/PTM_MarkerFinder.Rnw
vignettes/graphics/FGCZ_Poster_Header_2014.pdf
vignettes/poster.Rnw
vignettes/protViz.Rnw
vignettes/protViz.bib
