| add_pull_request | Title |
| add_task | Title |
| analyse_alerts_and_categories | Analyses alerts |
| assemble_diff_command | Assembles the diff command between two code files |
| assemble_pmd_command | Assemble command in order to execute PMD |
| bind_outputs_correlate_satd | Title |
| calculate_features | calculate the features from the combination of the alerts in... |
| calculate_features_from_versions | Calculate features from combinations of PMD alerts of a new... |
| calculate_features_from_versions_and_extract_categorised_alerts | Title |
| compare_versions | Compare two versions of a source-code in terms of kludges |
| compare_versions_read_outside | Compare two versions of a source-code in terms of kludges |
| correlate_satd_pmd | Title |
| create_backlog | Title |
| create_pull_request | Title |
| create_task | Title |
| create_version_comparisons_comment | Create verstion comparison of comments |
| cross_versions | Adds the line map to the dataframe used inside... |
| decide_heurist_if_same_alert | Decide, with an heuristic, based on features, if a... |
| decorate_code | Make lines of code nice in a markdown document |
| decorate_code_alerts_mapped | Make two versions of lines of code look nice, side by side,... |
| decorate_code_and_alerts | Make lines of code look nice in markdown, with their alerts |
| extract_clean_features_from_calculated_features | Extract only the features from the structure generated by... |
| extract_comments_from_code | Extract comments from java/C source code |
| extract_diff_pairs_from_diff_file | extract from diff files th diff pairs |
| extract_piece_of_code | Extract piece of code |
| generate_ast_tree_from_raw_nodes | Generate Abstract Syntax Tree from raw nodes |
| get_dev_status | Title |
| get_kludge_expressions | Kludge exressions |
| join_ast_alerts | Join a graph containing the ast and the alerts |
| map_lines | Map lines from two files based on the diff result on them |
| read_and_decorate_code | Reads a code file, decorate and returns a string for a... |
| read_and_decorate_code_and_alerts | Read a source code and, with its alerts, make it nice to put... |
| read_and_decorate_code_and_alerts_mapped | Reads an old version ans a new version of a source code and... |
| read_number_of_lines | Return number of lines of the file |
| read_pmd_xml | Read and format XML file generated by PMD |
| read_raw_ast_nodes | Raw abstract syntax tree from a source code file |
| read_results | Title |
| report_features | Reports the features in a latex table |
| save_alerts | Save alerts from a directory with versions |
| set_devs_actions | Title |
| show_ast | Generate a plot from graph with AST |
| show_latex_raw_ast_nodes | Show nodes as latex |
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