Man pages for cx30/INDEED
An Implementation of Integrated Differential Expression and Differential Network Analysis for Biomarker Candidate Selection
| choose_rho | Draw error curve |
| compute_cor | Compute the correlation |
| compute_dns | Calculate differential network score |
| compute_par | Compute the partial correlation |
| INDEED | INDEED: A package for biomarker candidate prioritization. |
| loglik_ave | Create log likelihood error function |
| Met_Group_GU | Group label. |
| Met_GU | GU CIRR and GU HCC combined . |
| Met_name_GU | KEGG ID |
| permutation_cor | Permutations to build differential network using correlation |
| permutation_pc | Permutations to build differential network using partial... |
| permutation_thres | Calculate the positive and negative threshold based on the... |
| pvalue_logit | Obtain p-values using logistic regression |
| pvalue_M_GU | P-values obtained by differential expression (DE) analysis. |
| select_sig | Select biomarker candidates |
