Files in cytolab/RAPID
Risk Assessment Population Identification
.DS_Store
.Rbuildignore
.gitignore
2019-12-14 RAPID Workflow Script on GBM Dataset.Rmd
2019-12-14-RAPID-Workflow-Script-on-GBM-Dataset.html
2020-01-15 RAPID Workflow Script on Davis Dataset.Rmd
2020-04-21 RAPID Stability Tests on Davis Dataset.Rmd
DESCRIPTION
LICENSE
NAMESPACE
R/optimize_FlowSOM_clusters.R
R/plot_clusters.R
R/plot_sig_clusters.R
R/plot_survival_curves.R
R/significant_clusters.R
R/subset_survival_analysis.R
RAPID.Rproj
README.md
data_files/.DS_Store
data_files/davis_dataset/2019-04-26 DDPR clinical data.csv
data_files/davis_dataset/UPN01_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN02_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN03_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN04_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN05_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN06_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN07_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN08_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN09_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN10_Basal_Ungated_viSNE.fcs
data_files/davis_dataset/UPN11_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN12_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN13_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN14_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN15_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN16_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN17_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN18_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN19_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN20_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN21_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN22_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN23_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN24_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN25_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN26_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN27_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN28_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN29_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN30_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN31_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN35_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN45_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN47_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN48_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN49_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN50_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN51_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN52_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN53_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN54_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN55_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN56_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN57_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN58_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN90_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN91_basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN92_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN93_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN94_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN95_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN96_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN97_Basal_updated_Ungated_viSNE.fcs
data_files/davis_dataset/UPN98_Basal_updated_Ungated_viSNE.fcs
data_files/gbm_dataset/.DS_Store
data_files/gbm_dataset/2017-01-17 LC10B_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-01-17 LC11A_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-01-17 LC12A_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-01-17 W12_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-01-17 W4_SIG (2)_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-01-17 W5_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-01-24 LC-18 SIG-concat_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-01-25 LC-21 SIG_2_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-01-25 LC-27 SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-01-25 RT-07 SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-01-25 RT-14 SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-02-20 K01_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-02-20 LC25_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-02-20 LC26_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-02-20 RT15_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-02-20 W11_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-02-20 W14_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/2017-02-20 W15_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/GBM Survival Data.csv
data_files/gbm_dataset/LC02AB_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/LC03A_SIG2_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/LC04B_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/LC06B_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/LC08A_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/LC09A_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/LC22_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/RT01B_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/RT10_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
data_files/gbm_dataset/W2_SIG_cells_found_normalized_Live_cells_tight_viSNE_GBM_Ungated_viSNE.fcs
