Files in cytomining/cytotools
Command-Line Tools to Get Things Done Using Cytominer
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/aggregate.R
R/annotate.R
R/normalize.R
R/preselect.R
R/regularize.R
R/sample.R
README.md
cran-comments.md
cytotools.Rproj
inst/extdata/backend/batch0/SQ00015116/SQ00015116.csv
inst/extdata/backend/batch0/SQ00015116/SQ00015116.sqlite
inst/extdata/backend/batch0/SQ00015116/SQ00015116_augmented.csv
inst/extdata/backend/batch0/SQ00015116/SQ00015116_normalized.csv
inst/extdata/backend/batch0/SQ00015116/SQ00015116_normalized_single_cell.csv
inst/extdata/backend/batch0/SQ00015116/SQ00015116_normalized_variable_selected.csv
inst/extdata/backend/batch0/SQ00015117/SQ00015117.csv
inst/extdata/backend/batch0/SQ00015117/SQ00015117.sqlite
inst/extdata/backend/batch0/SQ00015117/SQ00015117_augmented.csv
inst/extdata/backend/batch0/SQ00015117/SQ00015117_normalized.csv
inst/extdata/backend/batch0/SQ00015117/SQ00015117_normalized_single_cell.csv
inst/extdata/backend/batch0/SQ00015117/SQ00015117_normalized_variable_selected.csv
inst/extdata/backend/batch0/collapsed.csv
inst/extdata/create_testdata.sh
inst/extdata/metadata/batch0/barcode_platemap.csv
inst/extdata/metadata/batch0/moa.csv
inst/extdata/metadata/batch0/platemap/C-7161-01-LM6-001.txt
inst/extdata/parameters/batch0/sample/normalized_sample.csv
inst/extdata/parameters/batch0/variable_selection/correlation_threshold.txt
inst/extdata/parameters/batch0/variable_selection/replicate_correlation.csv
inst/extdata/parameters/batch0/variable_selection/replicate_correlation.txt
inst/extdata/parameters/batch0/variable_selection/variance_threshold.txt
inst/scripts/cytotools_aggregate
inst/scripts/cytotools_annotate
inst/scripts/cytotools_normalize
inst/scripts/cytotools_preselect
inst/scripts/cytotools_regularize.R
inst/scripts/cytotools_sample
man/aggregate.Rd
man/annotate.Rd
man/normalize.Rd
man/preselect.Rd
man/regularize.Rd
man/sample.Rd
tests/testthat.R
tests/testthat/test-aggregate.R
tests/testthat/test-annotate.R
tests/testthat/test-normalize.R
tests/testthat/test-preselect.R
tests/testthat/test-regularize.R
tests/testthat/test-sample.R
vignettes/cytotools-pipeline.Rmd
