Files in d2gex/seabasstfm
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R/config.R R/detections/cumulative_individual_station_composition.R R/detections/detection_views.R R/detections/input_data.R R/detections/length_zone_run.R R/detections/si_run.R R/detections/unique_individual_station_composition.R R/graph_legends.R R/graph_metrics/all_individuals_monthly_metrics.R R/graph_metrics/graph_metrics.R R/graph_metrics/grid_plotting_metric_utils.R R/graph_metrics/individual_monthly_metrics.R R/graph_metrics/input_data.R R/graph_metrics/metric_heatmapping.R R/graph_metrics/metric_stats.R R/graph_metrics/metric_strategies.R R/graph_metrics/node_interactions.R R/graph_metrics/tfm_graphs/grid_graph_metrics.R R/graph_metrics/tfm_graphs/individuals_and_detection_details.R R/graph_utils.R R/heatmap_utils.R R/stats_utils.R R/utils.R README.md
data/gis_data/coast/coast_cat_fr.cpg
data/gis_data/coast/coast_cat_fr.dbf
data/gis_data/coast/coast_cat_fr.prj
data/gis_data/coast/coast_cat_fr.sbn
data/gis_data/coast/coast_cat_fr.sbx
data/gis_data/coast/coast_cat_fr.shp
data/gis_data/coast/coast_cat_fr.shp.xml
data/gis_data/coast/coast_cat_fr.shx
data/gis_data/coast/coast_cat_fr_2.cpg
data/gis_data/coast/coast_cat_fr_2.dbf
data/gis_data/coast/coast_cat_fr_2.prj
data/gis_data/coast/coast_cat_fr_2.shp
data/gis_data/coast/coast_cat_fr_2.shx
data/gis_data/coast/coast_cat_fr_3.cpg
data/gis_data/coast/coast_cat_fr_3.dbf
data/gis_data/coast/coast_cat_fr_3.prj
data/gis_data/coast/coast_cat_fr_3.shp
data/gis_data/coast/coast_cat_fr_3.shx
data/gis_data/coast/coast_cat_fr_port_3.cpg
data/gis_data/coast/coast_cat_fr_port_3.dbf
data/gis_data/coast/coast_cat_fr_port_3.prj
data/gis_data/coast/coast_cat_fr_port_3.shp
data/gis_data/coast/coast_cat_fr_port_3.shx
data/gis_data/coast/coast_cat_fr_rivers_3.cpg
data/gis_data/coast/coast_cat_fr_rivers_3.dbf
data/gis_data/coast/coast_cat_fr_rivers_3.prj
data/gis_data/coast/coast_cat_fr_rivers_3.shp
data/gis_data/coast/coast_cat_fr_rivers_3.shx
data/gis_data/coast/coast_project.qgz
data/res_med/2020_2021/RESMED_fish_database_20211018.csv
data/res_med/2020_2021/lubina_detections.csv
data/res_med/2020_2021/resmed_detections_2021_10.rds
data/res_med/2020_2021/resmed_receiver_locations.csv
data/res_med/2020_2022/lubina_detections.csv
data/res_med/2020_2022/resmed_fish_database.csv
data/res_med/2020_2022/resmed_receiver_locations.csv
docs/TFM_descripcion.docx
docs/TFM_descripcion.pdf
docs/analisis-primilimiar-roadmap-tesis.docx
docs/analisis/Data Analysis Summary.docx
docs/analisis/Data Analysis Summary.pdf
docs/analisis/analisis_preliminar_todos_individuos.docx
docs/analisis/analisis_preliminar_todos_individuos.pdf
docs/analisis/data-analysis.docx
docs/analisis/data-analysis.pdf
docs/notes.docx
docs/tfm.docx
docs/~$alisis-primilimiar-roadmap-fin-tesis.docx
docs/~$tfm.docx
outputs/all_montlhy_reports/DICLAB-16204 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-16214 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-16215 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-16225 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-16255 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-16271 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40162 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40163 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40164 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40168 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40170 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40172 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40175 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40177 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40179 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40182 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40186 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40211 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40690 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40692 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40697 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40698 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40699 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40700 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40701 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40702 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40703 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40708 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-40710 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-54170 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-54173 _monthly_graphs.pdf outputs/all_montlhy_reports/DICLAB-CONNECTMED-19803 _monthly_graphs.pdf
outputs/detection_erros.csv
outputs/frequency_graphs/report_frequency.pdf outputs/metrics/2020_2021/centrality/DICLAB-16204/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-16204/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-16204/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-16204/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-16204/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-16204/2021-05.pdf outputs/metrics/2020_2021/centrality/DICLAB-16204/DICLAB-16204_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2020-09.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2020-10.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2021-05.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2021-06.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/2021-07.pdf outputs/metrics/2020_2021/centrality/DICLAB-16214/DICLAB-16214_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2020-09.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2020-10.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2021-05.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2021-06.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/2021-07.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/DICLAB-16215_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-16215/february.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2020-09.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2020-10.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2021-05.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2021-06.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/2021-07.pdf outputs/metrics/2020_2021/centrality/DICLAB-16225/DICLAB-16225_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-16255/2020-09.pdf outputs/metrics/2020_2021/centrality/DICLAB-16255/2020-10.pdf outputs/metrics/2020_2021/centrality/DICLAB-16255/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-16255/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-16255/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-16255/DICLAB-16255_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-16271/2020-09.pdf outputs/metrics/2020_2021/centrality/DICLAB-16271/DICLAB-16271_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40162/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-40162/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-40162/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40162/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40162/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-40162/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-40162/2021-05.pdf outputs/metrics/2020_2021/centrality/DICLAB-40162/2021-06.pdf outputs/metrics/2020_2021/centrality/DICLAB-40162/2021-07.pdf outputs/metrics/2020_2021/centrality/DICLAB-40162/DICLAB-40162_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40163/2020-10.pdf outputs/metrics/2020_2021/centrality/DICLAB-40163/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-40163/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-40163/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40163/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40163/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-40163/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-40163/2021-05.pdf outputs/metrics/2020_2021/centrality/DICLAB-40163/2021-06.pdf outputs/metrics/2020_2021/centrality/DICLAB-40163/DICLAB-40163_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40164/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40164/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40164/DICLAB-40164_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40168/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40168/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40168/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-40168/DICLAB-40168_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40170/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40170/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-40170/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-40170/DICLAB-40170_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40172/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40172/DICLAB-40172_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40175/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40175/DICLAB-40175_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40177/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40177/DICLAB-40177_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40179/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40179/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-40179/DICLAB-40179_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40182/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40182/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40182/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-40182/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-40182/DICLAB-40182_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40186/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-40186/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40186/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40186/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-40186/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-40186/2021-05.pdf outputs/metrics/2020_2021/centrality/DICLAB-40186/DICLAB-40186_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40211/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40211/DICLAB-40211_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40690/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-40690/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40690/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40690/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-40690/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-40690/2021-05.pdf outputs/metrics/2020_2021/centrality/DICLAB-40690/2021-06.pdf outputs/metrics/2020_2021/centrality/DICLAB-40690/2021-07.pdf outputs/metrics/2020_2021/centrality/DICLAB-40690/DICLAB-40690_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40692/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-40692/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40692/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40692/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-40692/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-40692/2021-05.pdf outputs/metrics/2020_2021/centrality/DICLAB-40692/2021-06.pdf outputs/metrics/2020_2021/centrality/DICLAB-40692/2021-07.pdf outputs/metrics/2020_2021/centrality/DICLAB-40692/DICLAB-40692_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40697/2020-10.pdf outputs/metrics/2020_2021/centrality/DICLAB-40697/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-40697/DICLAB-40697_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40698/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-40698/DICLAB-40698_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40699/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-40699/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-40699/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40699/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40699/DICLAB-40699_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40700/2020-10.pdf outputs/metrics/2020_2021/centrality/DICLAB-40700/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-40700/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-40700/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40700/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40700/DICLAB-40700_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40701/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40701/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40701/DICLAB-40701_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-40702/2020-10.pdf outputs/metrics/2020_2021/centrality/DICLAB-40702/2020-11.pdf outputs/metrics/2020_2021/centrality/DICLAB-40702/2020-12.pdf outputs/metrics/2020_2021/centrality/DICLAB-40702/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-40702/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-40702/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-40702/2021-04.pdf 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outputs/metrics/2020_2021/centrality/DICLAB-54170/2020-09.pdf outputs/metrics/2020_2021/centrality/DICLAB-54170/2020-10.pdf outputs/metrics/2020_2021/centrality/DICLAB-54170/DICLAB-54170_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-54173/2021-01.pdf outputs/metrics/2020_2021/centrality/DICLAB-54173/2021-02.pdf outputs/metrics/2020_2021/centrality/DICLAB-54173/2021-03.pdf outputs/metrics/2020_2021/centrality/DICLAB-54173/2021-04.pdf outputs/metrics/2020_2021/centrality/DICLAB-54173/2021-05.pdf outputs/metrics/2020_2021/centrality/DICLAB-54173/2021-06.pdf outputs/metrics/2020_2021/centrality/DICLAB-54173/2021-07.pdf outputs/metrics/2020_2021/centrality/DICLAB-54173/DICLAB-54173_heatmaps.pdf outputs/metrics/2020_2021/centrality/DICLAB-CONNECTMED-19803/2020-10.pdf outputs/metrics/2020_2021/centrality/DICLAB-CONNECTMED-19803/DICLAB-CONNECTMED-19803_heatmaps.pdf outputs/metrics/2020_2021/centrality/all_individuals_average_path_length_heatmaps.pdf outputs/metrics/2020_2021/centrality/all_individuals_centrality_metrics_heatmaps.pdf outputs/metrics/2020_2021/centrality/feb_jul_centrality.pdf outputs/metrics/2020_2021/centrality/feb_july/months/DICLAB-16215 _ 2020-09 .pdf outputs/metrics/2020_2021/centrality/feb_july/months/DICLAB-16215 _ 2020-10 .pdf outputs/metrics/2020_2021/centrality/feb_july/months/DICLAB-16215 _ 2020-11 .pdf outputs/metrics/2020_2021/centrality/feb_july/months/DICLAB-16215 _ 2020-12 .pdf outputs/metrics/2020_2021/centrality/feb_july/months/DICLAB-16215 _ 2021-01 .pdf outputs/metrics/2020_2021/centrality/feb_july/months/DICLAB-16215 _ 2021-02 .pdf outputs/metrics/2020_2021/centrality/feb_july/months/DICLAB-16215 _ 2021-03 .pdf outputs/metrics/2020_2021/centrality/feb_july/months/DICLAB-16215 _ 2021-04 .pdf outputs/metrics/2020_2021/centrality/feb_july/months/DICLAB-16215 _ 2021-05 .pdf outputs/metrics/2020_2021/centrality/feb_july/months/DICLAB-16215 _ 2021-06 .pdf 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outputs/metrics/2020_2022/centrality/grid_graph_metrics.pdf_heatmaps_sorted.pdf outputs/metrics/2020_2022/centrality/grid_unique_individuals_per_station_month_whole_series_heatmaps_sorted.pdf outputs/metrics/2020_2022/centrality/individual_vs_months_heatmaps.pdf outputs/metrics/2020_2022/centrality/individual_vs_months_heatmaps_sorted.pdf outputs/metrics/2020_2022/centrality/length_zones_individuals_detections_heatmaps_sorted.pdf outputs/metrics/2020_2022/centrality/loops_zones_overall_cumulative.pdf outputs/metrics/2020_2022/centrality/m22_visiting_time_cumulative_detection.pdf outputs/metrics/2020_2022/centrality/minimum_graph.pdf outputs/metrics/2020_2022/centrality/monthly_unique_individual_detection_by_station_heatmaps_sorted.pdf outputs/metrics/2020_2022/centrality/node_interactions_with_other_nodes_heatmaps_sorted.pdf outputs/metrics/2020_2022/centrality/overall_cumulative_individual_detection.pdf outputs/metrics/2020_2022/centrality/stations_vs_months_heatmaps.pdf outputs/metrics/2020_2022/centrality/stations_vs_months_heatmaps_sorted.pdf
outputs/metrics/lkk_layout.txt
outputs/station_maps/coordinates.csv
outputs/station_maps/station_locations.qgz
outputs/station_nodes_only_graphs/station_nodes_only_report.pdf
seabass_tfm.Rproj
tests/testthat.R
tests/testthat/data/lubina-16214-16215-16225-2-weeks.csv
tests/testthat/data/presence-absence-dataframe-results.csv
tests/testthat/data/test_lubina16215.csv
tests/testthat/test-fish.R tests/testthat/test-utils.R
d2gex/seabasstfm documentation built on July 29, 2022, 2:20 a.m.