Man pages for danStich/anadrofish
Anadromous Fish Population Responses to Habitat Changes
| add_unequal_vectors | Add vectors of unequal length |
| anadrofish-package | anadrofish: Anadromous Fish Population Responses to Habitat... |
| beverton_holt | Beverton-Holt stock recruit curve |
| crecco_1983 | Daily mortality of juvenile American shad |
| custom_habitat_template | Make custom habitat for an existing river or a template for a... |
| fill_output | Fill output vectors |
| fl_tl_conversions | Fork length - total length conversions for river herring |
| get_dams | Get dams for specified river from American shad habitat data |
| get_govt | Get governmental unit for specified river by species |
| get_region | Get region for specified river by species |
| get_rivers | Rivers included in habitat data by species |
| habitat | American shad habitat |
| habitat_ale | Alewife habitat |
| habitat_bbh | Blueback herring habitat |
| jessop_1993 | Fork length-fecundity relationships for alewife |
| length_weight | Length-weight regression coefficients for American shad |
| lower95 | Calculate lower 95 % confidence limit |
| lw_pars_rh | Length-weight regression coefficients for river herring |
| make_downstream | Calculate downstream survival given dam passage scenario. |
| make_eggs | Simulate number of eggs per fish |
| make_eggs_rh | Simulate number of eggs per fish for river herring |
| make_habitat | Make cumulative habitat for river |
| make_iteroparity | Estimate rate of iteroparity for American shad from latitude... |
| make_lat | Retrieve latitude for American shad rivers. |
| make_maxage | Make maximum age for population using built-in data sets. |
| make_mortality | Make instantaneous natural mortality. |
| make_output | Make output vectors |
| make_pop | Make population |
| make_postspawn | Post-spawning survival |
| make_recruits | Make recruits |
| make_spawners | Make spawning population |
| make_spawnrecruit | Make age-specific proportion of spawners in population |
| make_spawnrecruit_rh | Make spawnrecruit vectors for river herring |
| make_s_spawn | Make total spawning migration mortality |
| maki_pars | Sex-specific maturity schedules for River Herring |
| maturity | Sex-specific maturity schedules for American shad |
| max_ages | Sex-specific maximum ages of American shad |
| mortality | Sex-specific instaneous mortality of American shad |
| mortality_rh | Sex-specific instantaneous natural mortality of river herring |
| olney_mcbride | Weight-batch fecundity relationships for American Shad |
| project_pop | Project population |
| sim_juvenile_s | Juvenile (hatch-to-outmigrant) survival |
| sim_pop | Simulate population dynamics through time. |
| upper95 | Calculate upper 95 % confidence limit |
| vbgf_ale | Sex-specific von Bertalanffy growth parameters for alewife |
| vbgf_bbh | Sex-specific von Bertalanffy growth parameters for blueback... |
| vbgf_NI | Sex-aggregate von Bertalanffy growth parameters for Northern... |
| vbgf_SI | Sex-aggregate von Bertalanffy growth parameters for Southern... |
| vbgf_SP | Sex-aggregate von Bertalanffy growth parameters for... |
| write_output | Write simulation results |
