Man pages for danStich/penPass
R package for Atlantic salmon PenPass model
| distance_traveled | Distance traveled within segments |
| downstream_brownsmills | Downstream data for Browns Mills |
| downstream_greatworks | Downstream data for Great Works |
| downstream_howland | Downstream data for Howland |
| downstream_mattaceunk | Downstream data for Mattaceunk |
| downstream_medway | Downstream data for Medway |
| downstream_milford | Downstream data for Milford |
| downstream_moosehead | Downstream data for Moosehead |
| downstream_orono | Downstream data for Orono |
| downstream_stillwater | Downstream data for Stillwater |
| downstream_veazie | Downstream data for Veazie |
| downstream_westenfield | Downstream data for West Enfield |
| EPN | East Branch Penobscot (EPN) sub-basin |
| flow_ranks | Cumulative distribution ranks for flows by year |
| flow_ratios | Flow ratios data set |
| get_annual_flows | Get annual flows |
| get_dam_passage | Get dam-specific survival rates |
| get_stillwater_use | Get probability of fish using Stillwater Branch |
| get_stocking_data | Get historical stocking data |
| latent_estuary | Latent estuary survival coefficients for dams |
| make_EPN | Create East Branch Penobscot River smolt population |
| make_EPN_hazards | Create survival hazards in East Branch Penobscot River |
| make_Matt | Create Mattawamkeag River smolt population |
| make_Matt_hazards | Create survival hazards in Mattawamkeag River |
| make_PISC | Create Piscataquis River smolt population |
| make_PISC_hazards | Create survival hazards in Piscataquis River |
| make_PN | Create Mainstem Penobscot River smolt population |
| make_PN_hazards | Create survival hazards in lower mainstem Penobscot River |
| make_WPN | Create West Branch Penobscot River smolt population |
| make_WPN_hazards | Create survival hazards in West Branch Penobscot River |
| Matt | Mattawamkeag River sub-basin |
| mort_per_km | Empirical cumulative distribution function for natural... |
| penPass_shiny | Run the PenPass model interactively with shiny |
| PISC | Piscataquis River sub-basin |
| PN | Penobscot River sub-basin |
| run_downstream_migration | Run downstream migration module |
| run_downstream_migration_pn | Run downstream migration module |
| run_one_year | Run one year in penPass model |
| sim_km_mort | Simulate natural, per kilometer survival |
| split_pn | Split lower Penobscot River smolts |
| stillwater_pars | Stillwater logistic regression parameters |
| stillwater_splits | Stillwater split flows |
| stocking_data | Stocking data for Penobscot River watershed |
| survival_ranks | Cumulative distribution ranks for flows by year |
| WPN | West Branch Penobscot (EPN) sub-basin |
