Files in danielward27/sbizombies
Simulation-based inference on zombie outbreak models
.RData
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/abc.R
R/abc_mcmc.R
R/abc_rej.R
R/utils.R
R/zzz.r
README.md
analysis/.RData
analysis/.Rhistory
analysis/.Rproj.user/7C22CF9A/pcs/debug-breakpoints.pper
analysis/.Rproj.user/7C22CF9A/pcs/files-pane.pper
analysis/.Rproj.user/7C22CF9A/pcs/source-pane.pper
analysis/.Rproj.user/7C22CF9A/pcs/windowlayoutstate.pper
analysis/.Rproj.user/7C22CF9A/pcs/workbench-pane.pper
analysis/.Rproj.user/7C22CF9A/persistent-state
analysis/.Rproj.user/7C22CF9A/rmd-outputs
analysis/.Rproj.user/7C22CF9A/saved_source_markers
analysis/.Rproj.user/7C22CF9A/sources/prop/086BFE2D
analysis/.Rproj.user/7C22CF9A/sources/prop/2DA62C05
analysis/.Rproj.user/7C22CF9A/sources/prop/309FA27A
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analysis/.Rproj.user/7C22CF9A/sources/prop/EC7F2828
analysis/.Rproj.user/7C22CF9A/sources/prop/F78B9FA5
analysis/.Rproj.user/7C22CF9A/sources/prop/INDEX
analysis/.Rproj.user/shared/notebooks/patch-chunk-names
analysis/.Rproj.user/shared/notebooks/paths
analysis/calc_log_probs.R
analysis/generate_pods.R
analysis/load_modules.sh
analysis/merge_posterior_means.R
analysis/metrics/logprobs.csv
analysis/plot_results.Rmd
analysis/plots/absolute_error_boxplot.png
analysis/plots/neg_log_boxplot.png
analysis/plots/true_vs_predicted.png
analysis/pods/pod_s_1.txt
analysis/pods/pod_s_10.txt
analysis/pods/pod_s_100.txt
analysis/pods/pod_s_11.txt
analysis/pods/pod_s_12.txt
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analysis/pods/pod_s_15.txt
analysis/pods/pod_s_16.txt
analysis/pods/pod_s_17.txt
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analysis/pods/pod_s_19.txt
analysis/pods/pod_s_2.txt
analysis/pods/pod_s_20.txt
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analysis/pods/pod_s_22.txt
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analysis/pods/pod_s_24.txt
analysis/pods/pod_s_25.txt
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analysis/pods/pod_s_27.txt
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analysis/pods/pod_s_3.txt
analysis/pods/pod_s_30.txt
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analysis/pods/pod_s_4.txt
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analysis/pods/pod_theta_1.txt
analysis/pods/pod_theta_10.txt
analysis/pods/pod_theta_100.txt
analysis/pods/pod_theta_11.txt
analysis/pods/pod_theta_12.txt
analysis/pods/pod_theta_13.txt
analysis/pods/pod_theta_14.txt
analysis/pods/pod_theta_15.txt
analysis/pods/pod_theta_16.txt
analysis/pods/pod_theta_17.txt
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analysis/pods/pod_theta_30.txt
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analysis/pods/pod_theta_37.txt
analysis/pods/pod_theta_38.txt
analysis/pods/pod_theta_39.txt
analysis/pods/pod_theta_4.txt
analysis/pods/pod_theta_40.txt
analysis/pods/pod_theta_41.txt
analysis/pods/pod_theta_42.txt
analysis/pods/pod_theta_43.txt
analysis/pods/pod_theta_44.txt
analysis/pods/pod_theta_45.txt
analysis/pods/pod_theta_46.txt
analysis/pods/pod_theta_47.txt
analysis/pods/pod_theta_48.txt
analysis/pods/pod_theta_49.txt
analysis/pods/pod_theta_5.txt
analysis/pods/pod_theta_50.txt
analysis/pods/pod_theta_51.txt
analysis/pods/pod_theta_52.txt
analysis/pods/pod_theta_53.txt
analysis/pods/pod_theta_54.txt
analysis/pods/pod_theta_55.txt
analysis/pods/pod_theta_56.txt
analysis/pods/pod_theta_57.txt
analysis/pods/pod_theta_58.txt
analysis/pods/pod_theta_59.txt
analysis/pods/pod_theta_6.txt
analysis/pods/pod_theta_60.txt
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analysis/pods/pod_theta_7.txt
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analysis/pods/pod_theta_8.txt
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analysis/pods/pod_theta_88.txt
analysis/pods/pod_theta_89.txt
analysis/pods/pod_theta_9.txt
analysis/pods/pod_theta_90.txt
analysis/pods/pod_theta_91.txt
analysis/pods/pod_theta_92.txt
analysis/pods/pod_theta_93.txt
analysis/pods/pod_theta_94.txt
analysis/pods/pod_theta_95.txt
analysis/pods/pod_theta_96.txt
analysis/pods/pod_theta_97.txt
analysis/pods/pod_theta_98.txt
analysis/pods/pod_theta_99.txt
analysis/posterior_means/mcmc_posterior_means.txt
analysis/posterior_means/rej_posterior_means.txt
analysis/posterior_means/sa_posterior_means.txt
analysis/regression.py
analysis/run_mcmc.R
analysis/run_mcmc.sh
analysis/run_posterior_means.R
analysis/run_posterior_means.sh
analysis/run_rej.R
analysis/run_rej.sh
analysis/run_sa.R
analysis/run_sa.sh
analysis/sbizombies.Rproj
analysis/tune_mcmc_params_temp.R
man/abc_rej.Rd
man/mean_and_sd.Rd
man/rcpp_hello_world.Rd
man/sbizombies-package.Rd
man/scaler.Rd
sbizombies.Rproj
src/RcppExports.cpp
src/RcppExports.o
src/abc_mcmc.cpp
src/abc_mcmc.o
src/distance.cpp
src/distance.h
src/distance.o
src/dprior.cpp
src/dprior.h
src/dprior.o
src/prop_mech.cpp
src/prop_mech.h
src/prop_mech.o
src/rcpp_hello_world.cpp
src/rcpp_hello_world.o
src/sbizombies.so
src/szr.cpp
src/szr.h
src/szr.o
tests/testthat.R
tests/testthat/test_abc_rej.R
tests/testthat/test_distance.R
tests/testthat/test_example.R
tests/testthat/test_szr.R
tests/testthat/test_utils.R
