API for darcyj/specificity
Calculate Environmental or Host Phylogenetic Specificity

Global functions
aggregate_specs_list Man page Source code
bl_distance_ns Man page Source code
calculate_spec_and_pval Man page Source code
check_pes_inputs Man page Source code
circularize2dist Man page Source code
distcalc Man page Source code
endophyte Man page
fit_gamma_fwd_rev Man page Source code
gamma_hist_cor Man page Source code
get_ga_defaults Man page Source code
make_nested_set Man page Source code
mode_gamma_fwd_rev Man page Source code
occ_threshold Man page Source code
onto2nwk Man page Source code
p_from_perms_or_gfit Man page Source code
p_gamma_fwd_rev Man page Source code
pairwise_product Man page Source code
phy_or_env_spec Man page Source code
plot_grid_abunds Man page Source code
plot_pairwise_spec Man page Source code
plot_specificities Man page Source code
plot_specs_stacks Man page
plot_specs_violin Man page Source code
prop_abund Man page Source code
random_rep_positions Man page Source code
randomgrid Man page Source code
rao1sp Man page Source code
rao_genetic_max Man page Source code
raoperms Man page Source code
tips_from_node Man page Source code
tree2mat Man page Source code
wpd Man page Source code
wpd_table Man page Source code
darcyj/specificity documentation built on Aug. 1, 2023, 8 a.m.