Files in darcyj/specificity
Calculate Environmental or Host Phylogenetic Specificity
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/aggregate_specs_list.r
R/bl_distance_ns.r
R/calculate_spec_and_pval.r
R/check_pes_inputs.r
R/circularize2dist.r
R/data.r
R/distcalc.r
R/gamma_funs.r
R/get_ga_defaults.r
R/make_nested_set.r
R/occ_threshold.r
R/onto2nwk.r
R/phy_or_env_spec.r
R/plot_grid_abunds.r
R/plot_pairwise_spec.r
R/plot_specificities.r
R/prop_abund.r
R/random_rep_positions.r
R/randomgrid.r
R/tips_from_node.r
R/tree2mat.r
R/wpd.r
R/wpd_table.r
README.md
data/endophyte.rdata
man/.Rbuildignore
man/.Rhistory
man/aggregate_specs_list.Rd
man/bl_distance_ns.Rd
man/calculate_spec_and_pval.Rd
man/check_pes_inputs.Rd
man/circularize2dist.Rd
man/distcalc.Rd
man/endophyte.Rd
man/fit_gamma_fwd_rev.Rd
man/gamma_hist_cor.Rd
man/get_ga_defaults.Rd
man/make_nested_set.Rd
man/mode_gamma_fwd_rev.Rd
man/occ_threshold.Rd
man/onto2nwk.Rd
man/p_from_perms_or_gfit.Rd
man/p_gamma_fwd_rev.Rd
man/pairwise_product.Rd
man/phy_or_env_spec.Rd
man/plot_grid_abunds.Rd
man/plot_pairwise_spec.Rd
man/plot_specs_stacks.Rd
man/plot_specs_violin.Rd
man/prop_abund.Rd
man/random_rep_positions.Rd
man/randomgrid.Rd
man/rao1sp.Rd
man/rao_genetic_max.Rd
man/raoperms.Rd
man/tips_from_node.Rd
man/tree2mat.Rd
man/wpd.Rd
man/wpd_table.Rd
other/.Rbuildignore
other/NAMESPACE
other/additional_namespace/rcpp_namespace.txt
other/additional_namespace/readme
other/additional_namespace/vanillaR_namespace.txt
other/changelog.txt
other/github_stuff.sh
other/package_versions.txt
other/test_results.txt
other/update_r_package.r
specificity.Rproj
specificity.pdf
src/.gitignore
src/RcppExports.cpp
src/RcppExports.o
src/cppfuns.cpp
src/cppfuns.o
src/phy_or_env_spec.cpp
src/specificity.so
tests/phylogenetic_entropy_calc.jpg
tests/testthat.R
tests/testthat/p_from_perms_or_gfit.R
tests/testthat/test-aggregate_specs_list.R
tests/testthat/test-circularize2dist.R
tests/testthat/test-make_nested_set.R
tests/testthat/test-onto2nwk.R
tests/testthat/test-pairwise_product.R
tests/testthat/test-phy_or_env_spec.R
tests/testthat/test-test-wpd.R
tests/testthat/test-tree2mat.R
tests/testthat/test-wpd.R
tests/testthat/testthat-problems.rds
vignette/.Rhistory
vignette/endophytes_specs_app/app.R
vignette/endophytes_specs_app/appdata.rdata
vignette/endophytes_specs_app/funs.r
vignette/screenshots/screenshot_1.png
vignette/screenshots/screenshot_2.png
vignette/vignette.html
vignette/vignette.pdf
vignette/vignette.rmd
