Man pages for databio/FUSED
FUSED: FUSion Error prone repair Detection
| calcBIR | Helper function to calculate BIR homologies |
| calcHomology | Checks a fusion for hallmarks of microhomology error prone... |
| calcMMBIR | Helper function to calculate MMBIR homologies |
| calcMMEJ | Helper function to calculate MMEJ homologies |
| calcNHEJ | Helper function to calculate NHEJ homologies |
| calcPairwiseAlignment | Helper function to calculate the optimal pairwise alignment... |
| calcSSA | Helper function to calculate SSA homologies |
| constructARRIBA | Modify a valid ARRIBA fusion data.table for downstream... |
| constructORIEN | Modify a valid ORIEN fusion data.table for downstream... |
| constructSTAR | Modify a valid STAR fusion data.table for downstream analysis |
| dot-validARRIBA | Checks if provided object is an ARRIBA derived fusion... |
| dot-validBSgenome | Checks if provided genome is an available BSgenome object,... |
| dot-validORIEN | Checks if provided object is an ORIEN derived fusion... |
| dot-validSTAR | Checks if provided object is a STAR derived fusion prediction... |
| fused | FUSED R package |
| plotHomology | Plot the fusions that pass by mechanism. |
| splitDataTable | Splits a data.table object into a list of data.tables based... |
| theme_FUSED | A standardized ggplot theme for FUSED plots |
