Files in davidsbutcher/GUPPI
Summarize, expand, and visualize top-down analysis results
.Rbuildignore
.gitignore
DESCRIPTION
GUPPI.Rproj
LICENSE
LICENSE.md
NAMESPACE
R/add_uniprot_info.R
R/download_UP_database.R
R/guppi.R
R/helper_functions.R
R/parse_mods.R
R/parse_mods_allhits.R
R/parse_mods_special.R
R/read_tdreport_protein.R
R/read_tdreport_protein_full.R
R/read_tdreport_proteoform.R
R/run_shiny_app.R
README.md
Table S1.xlsx
_pkgdown.yml
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/inst/assets/guppilogo.png
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/add_GRAVY.html
docs/reference/add_GRAVY_allhits.html
docs/reference/add_fraction.html
docs/reference/add_masses.html
docs/reference/add_uniprot_info.html
docs/reference/chunk2.html
docs/reference/coalesce_by_column.html
docs/reference/download_UP_database.html
docs/reference/get_GO_terms.html
docs/reference/get_data_path.html
docs/reference/get_locations_byfraction.html
docs/reference/get_locations_byfraction2.html
docs/reference/get_locations_protein.html
docs/reference/get_locations_proteoform.html
docs/reference/guppi.html
docs/reference/index.html
docs/reference/kickout.html
docs/reference/parse_mods.html
docs/reference/parse_mods_allhits.html
docs/reference/parse_mods_special.html
docs/reference/read_tdreport_protein.html
docs/reference/read_tdreport_protein_full.html
docs/reference/read_tdreport_proteoform.html
inst/assets/guppilogo.png
inst/css/MagLab-Color-FTICR-Logo.png
inst/css/NSF_logo_header.png
inst/css/guppilogo.png
inst/css/icr-shinyproxy-header.png
inst/css/maglab_theme.css
inst/extdata/GO_cellular_component_taxon2759_eukaryota.csv
inst/extdata/GO_cellular_component_taxon2_bacteria.csv
inst/extdata/GO_subcellular_locations.rds
inst/extdata/UPdatabase/10090_full_UniProt_database.rds
inst/extdata/UPdatabase/2097_full_UniProt_database.rds
inst/extdata/UPdatabase/3055_full_UniProt_database.rds
inst/extdata/UPdatabase/4932_full_UniProt_database.rds
inst/extdata/UPdatabase/6239_full_UniProt_database.rds
inst/extdata/UPdatabase/83333_full_UniProt_database.rds
inst/extdata/UPdatabase/9606_full_UniProt_database.rds
inst/extdata/UPdatabase/UPtaxon10090.rds
inst/extdata/UPdatabase/UPtaxon2097.rds
inst/extdata/UPdatabase/UPtaxon3055.rds
inst/extdata/UPdatabase/UPtaxon4932.rds
inst/extdata/UPdatabase/UPtaxon6239.rds
inst/extdata/UPdatabase/UPtaxon83333.rds
inst/extdata/UPdatabase/UPtaxon9606.rds
inst/extdata/tdreport_mods_table.rds
inst/fonts/glyphicons-halflings-regular.eot
inst/fonts/glyphicons-halflings-regular.svg
inst/fonts/glyphicons-halflings-regular.ttf
inst/fonts/glyphicons-halflings-regular.woff
inst/fonts/glyphicons-halflings-regular.woff2
inst/rmd/generate_dashboard_child.Rmd
inst/rmd/generate_dashboard_child_static.Rmd
inst/rmd/generate_dashboard_parent.Rmd
inst/shiny/Dockerfile
inst/shiny/about.md
inst/shiny/rsconnect/shinyapps.io/davidbutcher/GUPPI.dcf
inst/shiny/server.R
inst/shiny/ui.R
inst/shiny/www/FT-ICR-logo.png
inst/shiny/www/NSF_logo_header.png
inst/shiny/www/guppilogo.png
inst/shiny/www/guppilogosmall.png
inst/shiny/www/icr-shinyproxy-header.png
inst/shiny/www/maglab_brandname_download.jpg
inst/shiny/www/maglab_theme.css
inst/shiny/www/maglab_theme_abundancer.css
inst/shiny/www/maglab_theme_old.css
inst/shiny/www/spacelab.min.css
man/guppi.Rd
man/run_shiny_app.Rd
seshinf.xlsx
