Files in daynefiler/filer2020B
Analysis for DOI to be added
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/callSmpl.R
R/cfCallGeno.R
R/cfEstFF.R
R/empiricalBayes.R
R/expectedValues.R
R/pkgParams.R
R/plottingFunctions.R
R/pltExpMAF.R
R/pltMissclass.R
data/GenoMeta.RData
data/c3MatFetReads.RData
data/gt.RData
data/readSmry.RData
data/rs140468248.RData
data/sampleMeta.RData
inst/scripts/Snakefile
inst/scripts/cluster.json
inst/scripts/config.yaml
inst/scripts/envs/bcftools.yaml
inst/scripts/envs/depth.yaml
inst/scripts/envs/freebayes.yaml
inst/scripts/envs/keep.yaml
inst/scripts/envs/r.yaml
inst/scripts/envs/samtools.yaml
inst/scripts/envs/subsetPairs.yaml
inst/scripts/envs/variantbam.yaml
inst/scripts/makePckgData.R
inst/scripts/matFetFrags/README
inst/scripts/matFetFrags/c3MatFetReads.R
inst/scripts/matFetFrags/identifyReads.R
inst/scripts/matFetFrags/informativeSites.R
inst/scripts/matFetFrags/runPileup.sh
inst/scripts/matFetFrags/subsetReads.sh
inst/scripts/scripts/getAdepFdist.R
inst/scripts/scripts/getAlleleCounts.R
inst/scripts/scripts/getFragDist.R
inst/scripts/scripts/highQualMap.java
man/cfCallGeno.Rd
man/cfEstFF.Rd
man/cfPltPMARHist.Rd
man/empiricalBayesFuncs.Rd
man/expectedValues.Rd
man/pkgParams.Rd
vignettes/data-c3Calls.rds
vignettes/data-depth.rds
vignettes/fig-binDist-1.png
vignettes/fig-binDist-2.png
vignettes/fig-f34FragLen-1.png
vignettes/fig-f34FragLen-2.png
vignettes/fig-fragLgnd-1.png
vignettes/fig-genoHist-1.png
vignettes/fig-genoHist-2.png
vignettes/fig-genoHist-3.png
vignettes/fig-genoLgnd-1.png
vignettes/fig-pmarBySratio-1.png
vignettes/fig-pmarBySratio-2.png
vignettes/fig-pmarBySratio-3.png
vignettes/filer2020B.bib
vignettes/paper.Rnw
vignettes/paper.tex
vignettes/supplement.Rnw
vignettes/supplement.tex
vignettes/unsrt4.bst
