API for dbottomly/oligoMask
Tools for masking out problematic Affymetrix probes using VCF files and the oligo package
| Global functions | |
|---|---|
| SangerTableSchemaList | Man page |
| SunGeneFS | Man page |
| TableSchemaList | Man page |
| TableSchemaList-class | Man page |
| VariantMaskParams | Man page |
| VariantMaskParams-class | Man page |
| VcfDB | Man page |
| VcfDB-class | Man page |
| add.vcf.to.db | Man page |
| create.sanger.mouse.vcf.db | Man page |
| createTable | Man page |
| createTable,TableSchemaList-method | Man page |
| getProbeDf | Man page |
| getProbeDf,VariantMaskParams-method | Man page |
| insertStatement | Man page |
| insertStatement,TableSchemaList-method | Man page |
| make.vcf.table | Man page |
| maskDb | Man page |
| maskDb,VariantMaskParams-method | Man page |
| maskRMA | Man page |
| maskRMA,GeneFeatureSet-method | Man page |
| mergeStatement | Man page |
| mergeStatement,TableSchemaList-method | Man page |
| oligoMask | Man page |
| oligoMask-package | Man page |
| om.db.file | Man page |
| om.lo.file | Man page |
| om.tab.file | Man page |
| om.vcf.file | Man page |
| populate.db.tbl.schema.list | Man page |
| searchCols | Man page |
| searchCols,TableSchemaList-method | Man page |
| searchDict | Man page |
| searchDict,TableSchemaList-method | Man page |
| searchTables | Man page |
| searchTables,TableSchemaList-method | Man page |
| tbsl | Man page |
| tbsl,VcfDB-method | Man page |
| test.pd.1.0.st.v1 | Man page |
| validProbeQuery | Man page |
| validProbeQuery,VariantMaskParams-method | Man page |
| vcfDb | Man page |
| vcfDb,VcfDB-method | Man page |
