Man pages for dcannonwalker/ncvi
Non-conjugate Variational Inference
| conjugate_update_mvn_REH | Conjugate update mu0 in the REH example |
| dispersion_est | A function to calculate tagwise dispersion based on empirical... |
| filter_counts | Filter counts based on number of zeros and mean counts, per... |
| fit_babel | Function to fit the 'babel' model to a RiboSeq experiment |
| fit_deseq | Function to fit the 'DESeq2' model to a RiboSeq experiment... |
| fit_ncvi | Non-conjugate variational inference |
| fit_xtail | Function to fit 'xtail' model to paired RiboSeq and RNA count... |
| nc_update_mvn | Non-conjugate update for the parameters of multivariate... |
| ncvi | ncvi: a package for fitting Bayesian GLMM to RNA-Seq and... |
| normalize | Normalize count table using DESeq2 |
| prep_babel | Function to prepare data as required by 'babel' |
| prep_bayseq | Expects samples to be organized as Ribo (ctrl, trt), RNA... |
| prep_deseq | Function to prepare the counts table and annotations required... |
| prep_ncvi | Prepare list of objects required for 'fit_ncvi()' |
| prep_ncvi2 | Prepare list of objects required for 'fit_ncvi()'. This is an... |
| prep_xtail | Function to take the simulated data set and format it as... |
| sim_data_mixture | Simulate a set of data to fit with the REH mixture prior... |
| vector2list | Transform a vector of length 'N * G' to a list of vectors... |
