Man pages for dcgerard/stramash
STRAMASH: Specifying The Right Amount of Mixture-likelihood for Adaptive SHrinkage
| autoselect.mixsd | This is a copy from the ashr package because it is not... |
| biash | Use control genes to estimate the unimodal inflation. Follow... |
| calc_loglik_array | Calculate log-likelihood. |
| calc_nulllik_array | Calculate the log-likelihood when all null. |
| compute_lfsr | Function to compute the local false sign rate. |
| dnormalmix | Density function for a mixture of normals. |
| dunimix | Density function for mixture of uniforms. |
| estimate_mixprop | Estimate mixture proportions of sigmaa by EM algorithm |
| gradient | Copied from ashr package because I need it and it is not... |
| initpi | This is copied from the ashr package because I need it and it... |
| laplace_to_mix | Generate an object of class 'normalmix' that is an... |
| log_compdens_conv_mix | Find log-component density convolution when error... |
| log_compdens_conv_mix.normalnormal | Normal-mixture - normal-mixture convolution. |
| log_compdens_conv_mix.normaluni | Normal-mixture - uniform-mixture convolution. |
| log_compdens_conv_mix.uninormal | Uniform-mixture - normal-mixture convolution. |
| log_compdens_conv_mix.uniuni | Uniform-mixture - uniform-mixture convolution. |
| mix_cdf_array | Compute cdf from a mix_array. |
| mixmean | Mean of either class 'normalmix' or class 'unimix' |
| mix_mean_array | Compute mean from a mix_array. |
| mix_probzero_array | Compute the probability of zero. |
| mixsd | Standard deviation of either class 'normalmix' or class... |
| mix_sd_array | Compute SD from a mix_array. |
| nnconv_dense | Normal-normal convolution log-density evaluated at a single... |
| normalize | Copied from ashr package because I need it and it is not... |
| nuconv_dense | Normal-uniform convolution log-density evaluated at a single... |
| penloglik | Copied from ashr package because I need it and it is not... |
| pnormalmix | CDF function for a mixture of normals. |
| post_mix_dist | Generate the posterior distribution when the error... |
| post_mix_dist.normalnormal | Normal-mixture - normal-mixture posterior calculation. |
| post_mix_dist.normaluni | Normal-mixture (prior) - uniform-mixture (error) posterior... |
| post_mix_dist.uninormal | Uniform-mixture (prior) - normal-mixture (error) posterior... |
| post_mix_dist.uniuni | Uniform-mixture - uniform-mixture posterior calculation. |
| process_args | Process input arguments for stramash.workhorse |
| punimix | Probability function for mixture of uniforms. |
| quantile_to_mix | Approximate the density function of any distribution given... |
| rnormalmix | Random draw from a mixture of normals. |
| runimix | Random draw from a mixture of uniforms. |
| setprior | This is a copy from the ashr package because it is not... |
| stramash | stramash |
| stramash.workhorse | Detailed Adaptive Shrinkage function |
| tic | From the ashr package because not exported but I need it. |
| toc | From the ashr package because not exported but I need it. |
| t_to_mix | Generate an object of class 'normalmix' that is an... |
| unconv_dense | Uniform-normal convolution log-density evaluated at a single... |
| uuconv_dense | Uniform-uniform convolution log-density evaluated at a single... |
