Man pages for dd-harp/MicroWNV
Discrete time simulation of West Nile virus
| compute_bloodmeal | Compute bloodmeals taken by mosquitoes on hosts |
| compute_B_pop | Compute total bird population (B_{pop}) |
| compute_B_pop.SIRS | Compute total SIRS bird population (B_{pop}) |
| compute_clutch | Compute number of eggs laid from birds for each patch |
| compute_clutch.SIRS | Compute SIRS egg clutches |
| compute_fledge | Compute number of new fledglings |
| compute_fledge.trace | Compute number of new fledglings from trace |
| compute_fledge.trace_deterministic | Compute number of new fledglings from trace (deterministic) |
| compute_fledge.trace_stochastic | Compute number of new fledglings from trace (stochastic) |
| compute_PsiB | Compute time at risk matrix (Psi) |
| compute_PsiB.SIRS | Compute SIRS bird time at risk matrix (Psi) |
| compute_q | Compute human blood feeding fraction (q) |
| compute_q.RM | Compute human blood feeding fraction for RM model (q) |
| compute_WB | Compute available birds (W_{B}) |
| compute_WB.SIRS | Compute available SIRS bird population (W_{B}) |
| compute_wfB | Compute bird biting weights (w_{f_{B}}) |
| compute_wfB.SIRS | Compute bird biting weights of SIRS birds (w_{f_{B}}) |
| compute_xB | Compute net infectiousness of birds (x_{B}) |
| compute_xB.SIRS | Compute net infectiousness of SIRS birds (x_{B}) |
| setup_birds_SIRS | Setup birds with SIRS infection model |
| setup_fledge_trace | Setup fledglings with trace (forced) births |
| step_birds | Update bird population |
| step_birds.SIRS | Update SIRS bird population |
| step_birds.SIRS_deterministic | Update SIRS bird population (deterministic) |
| step_birds.SIRS_stochastic | Update SIRS bird population (stochastic) |
| step_fledge | Update fledgling populations |
| step_fledge.trace | Update fledgling populations for forced births |
