| apply_relative_extent | Compute a domain extent from a process extent within a domain... |
| arg_parser | Parse command-line arguments. |
| ar_of_pr_rho | Creates a function that interpolates an AR-to-PR dataset. The... |
| assemble | Reads output from workers and produces GeoTIFFs and images. |
| build_ar2pr | This goes the other way, from AR to PR, with rho=0. |
| check_args | Check whether the input arguments make sense. |
| check_linearized_outputs | Check that the results are all finite. |
| chunk_nonzero | Find nonzeros in each chunk of tile data to see they loaded. |
| chunk_sums | Find the sum of each chunk of tile data to see they differ. |
| collect_and_permute | Given a list of matrices, construct a single... |
| combine_output | Given everything from lapply, combine it. |
| construct_plan | Makes an initial plan. |
| data_for_country | Get all the data for a country as a convenience function. |
| decode_hilbert | Given a Hilbert z-value, translate it into an x and y value. |
| draw_parameters | Takes a parameter that is an expression (of drawing a... |
| draw_parameters_three | Takes a parameter that is an expression (of drawing a... |
| draw_parameters_two | Takes a parameter that is an expression (of drawing a... |
| encode_hilbert | These functions are used to arrange a walk across a 2D matrix... |
| encode_hilbert_zero | Computes an integer Hilbert index for x and y using a variant... |
| find_relative_extent | Find where the tile is within the process extent. |
| flatten_draws | The draws are hierarchical by variable and then quantile.... |
| funcmain | If you want to run from the R command line, you can call... |
| gadm_country_shapefile | Retrieve the shapefile for a country at the given level. GADM... |
| globalrc | globalrc: Calculate R_c from PfPR and treatment rates. |
| improved_errors | Asks R for a stack trace that shows which function had the... |
| is_tile | Check that this is a tile. |
| linearized_work | Takes an input array in multiple dimensions and linearizes... |
| load_data | Load input data, including pr2ar, the PfPR, and the AM. |
| load_pixel_script | Loads a script that has functions to compute pixel values. |
| load_plan | Load the plan that you saved. |
| main | If you want to run from the Bash command line, you can call... |
| my_tasks | Pull my work, according to my task index. |
| over_block_draw | Run the pixel function on a chunk of data. |
| pixel_bounding_box | Given a bounding box in map coordinates (maybe lat-long),... |
| pixel_four | This version works harder on the low end and high end of PfPR... |
| pixel_three | This version works harder on the low end and high end of PfPR... |
| pixel_two | This was made with fits to the middle values of PfPR. It was... |
| plan_domain_decomposition | Given command-line arguments, determine how much data to... |
| plot_as_png | Customized plotting for different variables. |
| prepare_timeseries | Given the raw input data, prepare it for computation. |
| raster_extent_from_work | Given a list of tiles, figures out the bounding box of pixel... |
| read_dataset_names | Finds the name of every three-dimensional array in a file. |
| remove_tiles_over_water | Removes tiles that have all NA for this example slice. |
| save_chunks | Save a list of arrays to a single file. |
| save_plan | Save a plan for parallel execution to a file. |
| slice_funcmain | If you want to run from the R command line, you can call... |
| slice_main | If you want to run from the Bash command line, you can call... |
| summarize_draws | Given a list of draws, summarize mean and confidence... |
| task_work | Takes the extent of the tiles and returns a list of which... |
| task_work_from_tiles | Takes the extent of the tiles and returns a list of which... |
| worker | Reads the plan and produces this task's part of that plan. |
| write_output | Given outputs for a tile, write them to a folder. |
| years_in_filenames | Given a bunch of filenames, find all four-number digit... |
