API for demuellae/muBioAnnotatR
muBioAnnotatR
| Global functions | |
|---|---|
| RegionSetDB | Man page Source code |
| RegionSetDB-class | Man page |
| addRegionSet | Man page |
| addRegionSet,RegionSetDB-method | Man page |
| addRegionSetFromDataFrame | Man page |
| addRegionSetFromDataFrame,RegionSetDB-method | Man page |
| adjChrom | Source code |
| collections | Man page |
| collections,RegionSetDB-method | Man page |
| convert.bb.to.bed | Source code |
| dbDir | Man page |
| dbDir,RegionSetDB-method | Man page |
| export2Lola | Man page |
| export2Lola,RegionSetDB-method | Man page |
| genomes | Man page |
| genomes,RegionSetDB-method | Man page |
| getParseResult | Source code |
| getTfMotifClusters_altius | Source code |
| import.bb.df | Source code |
| import.gff.df | Source code |
| intialize,RegionSetDB-method | Man page |
| length,RegionSetDB-method | Man page |
| loadRegionSetDB | Man page Source code |
| parse.bed3 | Source code |
| parse.ensembl.regbuild | Source code |
| parse.ensembl.regbuild.bp | Source code |
| parse.gencode | Source code |
| parse.gtex.eqtl | Source code |
| parse.gwas.catalog.snps | Source code |
| parse.hnisz2013.se.supp | Source code |
| parse.motifmatchr | Source code |
| parse.mumbach2017.hichip.supptab | Source code |
| parse.pics.snps.farh2015.supp | Source code |
| parse.tfclusters.altius | Source code |
| parse.ucsc.cgis | Source code |
| parse.ucsc.repeats | Source code |
| parse.vista.enhancers | Source code |
| regionSetGr | Man page |
| regionSetGr,RegionSetDB-method | Man page |
| regionSetGr,regionSetGrDB-method | Man page |
| regionSetNames | Man page |
| regionSetNames,RegionSetDB-method | Man page |
| saveRegionSetDB | Man page Source code |
