Man pages for devonjkohler/MSstatsTMTPTM
Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
| dataProcessPlotsTMTPTM | Visualization for explanatory data analysis - TMT experiment |
| example.contrast.matrix | Example contrast matrix for input into the... |
| groupComparisonTMTPTM | Model PTM and/or protein data and make adjustments if needed |
| model.results.contrast | Ouput of groupComparisonTMTPTM for specific comparisons of... |
| model.results.pairwise | Ouput of groupComparisonTMTPTM for full pairwise test |
| MSstatsTMTPTM | MSstatsTMTPTM: A package for detecting differencially... |
| quant.msstats.protein | Example of output from proteinSummarizaiton function for... |
| quant.msstats.ptm | Example of output from proteinSummarizaiton function for PTM... |
| raw.protein | Example of input Protein dataset for TMT experiments. |
| raw.ptm | Example of input PTM dataset for TMT experiments. |
