Man pages for dfsp-spirit/brainloc
Find Region Names and Coordinates for a Point on the Human Brain
| annot_neighbors | Compute adjacency matrix of surface parcellation (annot)... |
| brainparc | Create a brain parcellation from custom data. |
| brainparc_fs | Create a brain parcellation from a subject in a FreeSurfer... |
| brainparc_neighbors | Compute adjacency of surface parcellation (annot) regions. |
| center_of_mass | Compute the center of mass of the given points. |
| cluster_extrema | Print information on cluster extreme values. |
| clusterinfo | Create clusterinfo data structure from files or pre-loaded... |
| clusterinfo_from_thresholded_overlay | Create clusterinfo instance from thresholded per-vertex data... |
| cluster_location_details | Get details on cluster locations. |
| cluster_overlapping_regions | Given vertex indices defining a cluster, find all atlas... |
| clusteroverlay_from_threshmap | Compute overlayID map from thresholded statmap (clustermap). |
| clusteroverlay_to_annot | Create a hemilist of fs.annot instances from the given... |
| cluster_peaks | Compute cluster peaks. |
| cluster_region_overlap | Compute overlapping atlas regions for clusters. |
| coord_closest_regions | Find closest regions to coordinate using Euclidean or... |
| coord_closest_vertex | Find closest surface vertex to a point, using Euclidean... |
| coord_fssurface_to_fstalairach | Transform FreeSurfer surface space coordinates into MNI... |
| coord_MNI152_to_talairach | Transform MNI152 coords to Talairach space using Matthew... |
| coord_MNI305_info | Get info on MNI305 surface coordinate in various coordinate... |
| coord_MNI305_to_MNI152 | Transform MNI305 coords (FreeSurfer fsaverage surface) to... |
| delete_all_optional_data | Delete all data in the package cache. |
| download_fsaverage | Download the FreeSurfer v6 fsaverage subject. |
| download_fsaverage3 | Download the FreeSurfer v6 low-resolution fsaverage3 subject. |
| download_talairach | Download the talairach volume and labels from talairach.org. |
| euclidian.dist | Compute Euclidean distance. |
| find.freesurferhome | Find the FREESURFER_HOME directory on disk. |
| fs_home | Return FreeSurfer path. |
| fs.surface.to.tmesh3d | Convert fs.surface to tmesh3d using freesurferformats of... |
| get_clusters | Get the clusters from a clusterinfo instance. |
| get_minannot | Extract minannot from fs.annot instance. |
| get_optional_data_filepath | Access a single file from the package cache by its file name. |
| get_subjects_dir | Find subjects_dir or stop. |
| get_surface | Extract the surface hemilist from a brainparc. |
| get_surface_coords | Extract the vertex coordinates from the brainparc surface. |
| get_talairach_label | Retrieve Talairach labels for Talairach coordinates from... |
| has_fs | Check whether a FreeSurfer installation can be found on the... |
| hemilist | Create hemilist. |
| hemilist.wrap | Wrap data into a named hemi list. |
| is.brainparc | Check whether object is a brainparc instance. |
| is.clusterinfo | Check whether x is a clusterinfo instance. |
| is.hemilist | Find out whether x is a hemilist |
| is.minannot | Check whether object is a minannot instance. |
| list_optional_data | Get file names available in package cache. |
| merge.hemi.annots | Merge the annotations from two hemispheres into one annot. |
| mni152reg_mtx | Get fsaverage (MNI305) to MNI152 transformation matrix. |
| name_regions | Get names of regions in labeled volume from color lookup... |
| num_clusters | Compute number of clusters from cluster annot or clusterinfo... |
| print.brainparc | Print description of a brainparc instance (S3). |
| region_centroids | Compute centroids of surface atlas parcellation regions. |
| region_color | Get color string for a region code in a color lookup table. |
| region_colors | Get colors for 'fs.annot' regions. |
| segmentation_centers | Find center of mass of regions in a brain volume... |
| single_cluster_peaks | Compute peaks of a single cluster. |
| sjd_demo | Download FreeSurfer template and demo data if needed and... |
| strvec2int | Convert vector of character strings to integer vector. |
| subject.annot | Load an annotation for a subject. |
| subject_minannot_fs | Return simplified annotation: the region names only. |
| subject.surface | Load a surface for a subject. |
| vappend | Append to vector or NULL. |
| vertex_closest_regions | Find closest regions to vertex using Euclidean or geodesic... |
| vertex_regions | Find regions for vertices in all brainparc atlases. |
