Man pages for diazrenata/cvlt
Cross validation methods for LDATS
| changepoint_dissimilarity | Change in community composition across changepoints |
| find_modal_cpts | Find modal combined location of changepoints |
| fit_ldats_crossval | Run LDATs on a dataset using crossvalidation |
| fit_means_lda | Make a toy LDA with species means |
| fit_multiple_ldats_crossval | Fit multiple LDATS crossval models |
| get_abund_probabilities | Get abundance probabilities |
| get_one_test_loglik | Get test row logliklihood (for one draw) |
| get_plants_annual | Get Portal plants |
| get_rodents_annual | Get Portal rodent data annually |
| get_test_loglik | Get test loglikelihood (all) |
| LDA_set_control_cv | Create control list for set of LDA models |
| LDA_set_user_seeds | Run a set of Latent Dirichlet Allocation models with... |
| ldats_subset_one | Run LDATS on a single dataset subset |
| modal_ts | Predictions from TS model using modal changepoint estimates |
| multinom_theta | Get theta matrix for one draw from posterior |
| pipe | Pipe operator |
| r2s | R2s from TS fit |
| run_best_model | Run best-fitting model |
| select_cvlt | Select simplest good model |
| subset_data_all | Subset data - all subsets |
| subset_data_one | Subset data - one subset |
| subset_lda | Subset an LDA model |
| summarize_ldats_fit | Summarize LDATS fits |
| summarize_model | Summarize a model fit |
