Man pages for diazrenata/rwar
RedWing Analyses in R
| add_drawn_individuals | Add drawn individuals |
| add_gmm | Add GMM density to an ISD |
| be_comparison | Compare ISD, sp composition |
| compare_actual_null_models | Compare null models to reality |
| compare_both_stanarms | COmpare all fits |
| compare_stanarms | Compare fits |
| construct_sampling_gmm | Construct GMMs for sampling |
| continental_null_model | Continental null model |
| continental_null_model_wrapper | Wrapper for continental null model |
| core_transient | Remove transient and/or non-core species |
| core_transient_null | Remove transient and/or non-core species |
| core_transient_sizenull | Remove transient and/or non-core species |
| draw_communities | Draw communities |
| draw_communities_wrapper | Wrapper for draw_communities |
| draw_individuals | Draw individuals from a GMM |
| draw_wrapper | Tiny wrapper to just get qis |
| extract_diagnostics | Extract model diagnostics |
| fit_gmm | Fit a GMM |
| fit_stanlm | Fit using rstanarm |
| just_isd | Get an ISD |
| just_transient | Get only transient or non-core speices |
| ks_comparison | KS comparison bootstrapped |
| local_null_model | Local null model |
| local_null_model_wrapper | Wrapper for local null model |
| loo_select | Select the simplest model within 1 se of the best model |
| make_actual_sims | Draw sims according to actual dynamics |
| make_nochange_sims | Simulate dynamics repeating begin dynamics for end |
| make_nosizechange_sims | Simulate dynamics repeating begin size structure for end |
| overlap_comparison | Compare isd overlap |
| percentile_score | Calculate percentile score |
| pipe | Pipe operator |
| regional_null_model | Regional null model |
| regional_null_model_wrapper | Wrapper for regional null model |
| ses | Calculate standardized effect size |
| shuffle_continental | Shuffle species for continental null model |
| shuffle_local | Perform species shuffling for local null model |
| shuffle_regional | Shuffle species for regional null model |
| sp_comparison | Compare species composition begin-end |
| ssims_wrapper | Wrapper for getting just summarized sims |
| summarize_null_models | Return ratio of mean e/b begin:end |
| summarize_null_results | Summarize actual v. null results |
| summarize_sims | Summarize across sims |
| winner_draws | Extract draws from winning models |
| winner_qis | Extract qis from draws |
