Files in diazrenata/scads
What the Package Does (One Line, Title Case)

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

R/compare_sads.R R/incorrect_sads.R R/legendre.R R/legendre_utils.R R/make_list.R R/plot-sads.R R/sample-fs.R R/sample-mete.R R/utils-pipe.R apps/coeffs_to_sad/app.R apps/sad_to_coeffs/app.R

fs_bank.Rds

fs_bank_94.Rds

fs_bank_plants.Rds

fs_bank_small.Rds

fs_space.R man/draw_poilog_samples.Rd man/eucl_rows.Rd man/generate_even_sad.Rd man/generate_exponential_sad.Rd man/generate_precipice_sad.Rd man/generate_stepwise_sad.Rd man/get_leg_matrix.Rd man/legendre_approx.Rd man/legendre_distance.Rd man/legendre_generate.Rd man/loglik_sad.Rd man/make_sad_samples_long.Rd man/make_samples_list.Rd man/pipe.Rd man/plot_sad_samples.Rd man/r2.Rd man/r2_onlist.Rd man/sample_METE.Rd man/sample_feasibleset.Rd man/scale_vector.Rd man/ssqe.Rd reports/coeffs_ordination.Rmd reports/coeffs_ordination.md

reports/coeffs_ordination_files/figure-markdown_github/distance to centroid and skew-1.png

reports/coeffs_ordination_files/figure-markdown_github/normality of coeffs-1.png

reports/coeffs_ordination_files/figure-markdown_github/pca-1.png

reports/coeffs_ordination_files/figure-markdown_github/pca-2.png

reports/coeffs_ordination_files/figure-markdown_github/pca-3.png

reports/coeffs_ordination_files/figure-markdown_github/plot rads and rescaled rads-1.png

reports/fs_space.Rmd reports/fs_space.md

reports/fs_space_files/figure-markdown_github/add some rats-1.png

reports/fs_space_files/figure-markdown_github/add some rats-2.png

reports/fs_space_files/figure-markdown_github/coefficients linecloud-1.png

reports/fs_space_files/figure-markdown_github/coefficients plus empirical linecloud-1.png

reports/fs_space_files/figure-markdown_github/coefficients skew 2-1.png

reports/fs_space_files/figure-markdown_github/coefficients skew 2-2.png

reports/fs_space_files/figure-markdown_github/coefficients skew 2-3.png

reports/fs_space_files/figure-markdown_github/coefficients skew-1.png

reports/fs_space_files/figure-markdown_github/compare skew to distance-1.png

reports/fs_space_files/figure-markdown_github/compare skew to distance-2.png

reports/fs_space_files/figure-markdown_github/compare skew to distance-3.png

reports/fs_space_files/figure-markdown_github/compare skew to distance-4.png

reports/fs_space_files/figure-markdown_github/compare skewness to rank distance-1.png

reports/fs_space_files/figure-markdown_github/density plot perhaps-1.png

reports/fs_space_files/figure-markdown_github/density plot perhaps?-1.png

reports/fs_space_files/figure-markdown_github/dist to centroid plot-1.png

reports/fs_space_files/figure-markdown_github/distance to centroid-1.png

reports/fs_space_files/figure-markdown_github/evar-1.png

reports/fs_space_files/figure-markdown_github/evar-2.png

reports/fs_space_files/figure-markdown_github/evar-3.png

reports/fs_space_files/figure-markdown_github/generate from centroid, empirical-1.png

reports/fs_space_files/figure-markdown_github/heatmap-1.png

reports/fs_space_files/figure-markdown_github/linecloud-1.png

reports/fs_space_files/figure-markdown_github/obs pred distance-1.png

reports/fs_space_files/figure-markdown_github/obs pred plots-1.png

reports/fs_space_files/figure-markdown_github/obs pred rank-1.png

reports/fs_space_files/figure-markdown_github/plot rads and rescaled rads-1.png

reports/fs_space_files/figure-markdown_github/raw abundance centroid-1.png

reports/fs_space_files/figure-markdown_github/rescaled sads and density plots-1.png

reports/fs_space_files/figure-markdown_github/sabund linecloud-1.png

reports/fs_space_files/figure-markdown_github/sabund plus empirical linecloud-1.png

reports/fs_space_files/figure-markdown_github/sabund skew-1.png

reports/fs_space_files/figure-markdown_github/sabund skew-2.png

reports/fs_space_files/figure-markdown_github/sabund skew-3.png

reports/fs_space_files/figure-markdown_github/sabund skew-4.png

reports/fs_space_files/figure-markdown_github/skew violin plot-1.png

reports/fs_space_files/figure-markdown_github/skew-1.png

reports/fs_space_files/figure-markdown_github/skew-2.png

reports/fs_space_files/figure-markdown_github/skewness vs coeffs-1.png

reports/fs_space_plants.md

reports/fs_space_plants_files/figure-markdown_github/coefficients linecloud-1.png

reports/fs_space_plants_files/figure-markdown_github/coefficients plus empirical linecloud-1.png

reports/fs_space_plants_files/figure-markdown_github/coefficients skew-1.png

reports/fs_space_plants_files/figure-markdown_github/compare skew to distance-1.png

reports/fs_space_plants_files/figure-markdown_github/compare skewness to rank distance-1.png

reports/fs_space_plants_files/figure-markdown_github/dist to centroid plot-1.png

reports/fs_space_plants_files/figure-markdown_github/distance to centroid-1.png

reports/fs_space_plants_files/figure-markdown_github/evar-1.png

reports/fs_space_plants_files/figure-markdown_github/generate from centroid, empirical-1.png

reports/fs_space_plants_files/figure-markdown_github/obs pred distance-1.png

reports/fs_space_plants_files/figure-markdown_github/obs pred rank-1.png

reports/fs_space_plants_files/figure-markdown_github/plot rads and rescaled rads-1.png

reports/fs_space_plants_files/figure-markdown_github/raw abundance centroid-1.png

reports/fs_space_plants_files/figure-markdown_github/sabund linecloud-1.png

reports/fs_space_plants_files/figure-markdown_github/sabund plus empirical linecloud-1.png

reports/fs_space_plants_files/figure-markdown_github/sabund skew-1.png

reports/fs_space_plants_files/figure-markdown_github/skew violin plot-1.png

reports/fs_space_rodents94.md

reports/fs_space_rodents94_files/figure-markdown_github/coefficients linecloud-1.png

reports/fs_space_rodents94_files/figure-markdown_github/coefficients plus empirical linecloud-1.png

reports/fs_space_rodents94_files/figure-markdown_github/coefficients skew-1.png

reports/fs_space_rodents94_files/figure-markdown_github/compare skew to distance-1.png

reports/fs_space_rodents94_files/figure-markdown_github/compare skewness to rank distance-1.png

reports/fs_space_rodents94_files/figure-markdown_github/dist to centroid plot-1.png

reports/fs_space_rodents94_files/figure-markdown_github/distance to centroid-1.png

reports/fs_space_rodents94_files/figure-markdown_github/evar-1.png

reports/fs_space_rodents94_files/figure-markdown_github/generate from centroid, empirical-1.png

reports/fs_space_rodents94_files/figure-markdown_github/obs pred distance-1.png

reports/fs_space_rodents94_files/figure-markdown_github/obs pred rank-1.png

reports/fs_space_rodents94_files/figure-markdown_github/plot rads and rescaled rads-1.png

reports/fs_space_rodents94_files/figure-markdown_github/raw abundance centroid-1.png

reports/fs_space_rodents94_files/figure-markdown_github/sabund linecloud-1.png

reports/fs_space_rodents94_files/figure-markdown_github/sabund plus empirical linecloud-1.png

reports/fs_space_rodents94_files/figure-markdown_github/sabund skew-1.png

reports/fs_space_rodents94_files/figure-markdown_github/skew violin plot-1.png

reports/fs_space_rodents_large.md

reports/fs_space_rodents_large_files/figure-markdown_github/coefficients linecloud-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/coefficients plus empirical linecloud-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/coefficients skew-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/compare skew to distance-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/compare skewness to rank distance-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/dist to centroid plot-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/distance to centroid-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/evar-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/generate from centroid, empirical-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/obs pred distance-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/obs pred rank-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/plot rads and rescaled rads-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/raw abundance centroid-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/sabund linecloud-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/sabund plus empirical linecloud-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/sabund skew-1.png

reports/fs_space_rodents_large_files/figure-markdown_github/skew violin plot-1.png

reports/misc_abund_statevars.Rmd reports/misc_abund_statevars.md

reports/misc_abund_statevars_files/figure-markdown_github/gentry-1.png

reports/misc_abund_statevars_files/figure-markdown_github/load-1.png

reports/misc_abund_statevars_files/figure-markdown_github/ma small-1.png

reports/misc_abund_statevars_files/figure-markdown_github/mcdb-1.png

reports/old/centroids_intuition/sensitivity.Rmd reports/old/centroids_intuition/sensitivity.md

reports/old/centroids_intuition/sensitivity_files/figure-markdown_github/abundance centroids-1.png

reports/old/centroids_intuition/sensitivity_files/figure-markdown_github/centroids-1.png

reports/old/centroids_intuition/sensitivity_files/figure-markdown_github/centroids-2.png

reports/old/centroids_intuition/sensitivity_files/figure-markdown_github/coeff distances-1.png

reports/old/centroids_intuition/sensitivity_files/figure-markdown_github/draw and plot fs and mete corpuses-1.png

reports/old/centroids_intuition/sensitivity_files/figure-markdown_github/fit and plot sims-1.png

reports/old/centroids_intuition/sensitivity_files/figure-markdown_github/generate and plot Leg coeffs-1.png

reports/old/centroids_intuition/sensitivity_files/figure-markdown_github/make and plot extreme cases-1.png

reports/old/centroids_intuition/sensitivity_plants.Rmd reports/old/centroids_intuition/sensitivity_plants.md

reports/old/centroids_intuition/sensitivity_plants_files/figure-markdown_github/centroids-1.png

reports/old/centroids_intuition/sensitivity_plants_files/figure-markdown_github/centroids-2.png

reports/old/centroids_intuition/sensitivity_plants_files/figure-markdown_github/coeff distances-1.png

reports/old/centroids_intuition/sensitivity_plants_files/figure-markdown_github/draw and plot fs and mete corpuses-1.png

reports/old/centroids_intuition/sensitivity_plants_files/figure-markdown_github/fit and plot sims-1.png

reports/old/centroids_intuition/sensitivity_plants_files/figure-markdown_github/generate and plot Leg coeffs-1.png

reports/old/centroids_intuition/sensitivity_stash.Rds

reports/old/centroids_intuition/sensitivity_stash_plants.Rds

reports/old/comparison_functions.md

reports/old/comparison_functions_files/figure-markdown_github/dist to centroids-1.png

reports/old/comparison_functions_files/figure-markdown_github/samples plot-1.png

reports/old/comparison_functions_files/figure-markdown_github/sse vs nleg-1.png

reports/old/comparison_functions_files/figure-markdown_github/unnamed-chunk-1-1.png

reports/old/comparison_functions_plants.Rmd reports/old/comparison_functions_plants.md

reports/old/comparison_functions_plants_files/figure-markdown_github/dist to centroids-1.png

reports/old/comparison_functions_plants_files/figure-markdown_github/get all coeffs-1.png

reports/old/comparison_functions_plants_files/figure-markdown_github/samples plot-1.png

reports/old/comparison_functions_plants_files/figure-markdown_github/sse vs nleg-1.png

reports/old/comparison_functions_plants_files/figure-markdown_github/unnamed-chunk-1-1.png

reports/old/comparison_functions_rodents.Rmd reports/old/comparison_functions_rodents.md

reports/old/comparison_functions_rodents_files/figure-markdown_github/dist to centroids-1.png

reports/old/comparison_functions_rodents_files/figure-markdown_github/samples plot-1.png

reports/old/comparison_functions_rodents_files/figure-markdown_github/sse vs nleg-1.png

reports/old/comparison_functions_rodents_files/figure-markdown_github/unnamed-chunk-1-1.png

reports/old/comparison_functions_scale.Rmd

reports/old/comparison_functions_stash/plants_centroid_dist.Rds

reports/old/comparison_functions_stash/plants_stash.RData

reports/old/comparison_functions_stash/rodents_centroid_dist.Rds

reports/old/comparison_functions_stash/rodents_stash.RData

scads.Rproj

submit_get_fs_samples.sbatch

tests/testthat.R tests/testthat/test01_testing.R

diazrenata/scads documentation built on Nov. 4, 2019, 10:30 a.m.

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diazrenata/scads
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What the Package Does (One Line, Title Case)

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diazrenata/scads What the Package Does (One Line, Title Case)

Files in diazrenata/scads What the Package Does (One Line, Title Case)

R Package Documentation

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diazrenata/scads
What the Package Does (One Line, Title Case)

Files in diazrenata/scads
What the Package Does (One Line, Title Case)