Files in diazrenata/scadsplants
Constraints on SADs of Portal Plants
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/get_plant_data.R
R/leg_functions.R
R/sampling_functions.R
R/singletons_functions.R
R/skew_functions.r
R/utils-pipe.R
README.md
analysis/pipeline.R
analysis/reports/dis.Rmd
analysis/reports/dis.md
analysis/reports/dis_files/figure-markdown_github/dist of skew-1.png
analysis/reports/dis_files/figure-markdown_github/do simpson and skewness give the same answers-1.png
analysis/reports/dis_files/figure-markdown_github/do simpson and skewness give the same answers-2.png
analysis/reports/dis_files/figure-markdown_github/do simpsons and skew give QUALITATIVELY same conclusions-1.png
analysis/reports/dis_files/figure-markdown_github/percentile change v fs size-1.png
analysis/reports/dis_files/figure-markdown_github/percentile change v fs size-2.png
analysis/reports/dis_files/figure-markdown_github/percentile change v fs size-3.png
analysis/reports/dis_files/figure-markdown_github/percentile change v fs size-4.png
analysis/reports/dis_files/figure-markdown_github/shannon violins-1.png
analysis/reports/dis_files/figure-markdown_github/simp skew zoomed-1.png
analysis/reports/dis_files/figure-markdown_github/simspon violins-1.png
analysis/reports/dis_files/figure-markdown_github/singletons 1to1-1.png
analysis/reports/dis_files/figure-markdown_github/skewness percentile hist-1.png
analysis/reports/dis_ts.Rmd
analysis/reports/dis_ts.md
analysis/reports/dis_ts_files/figure-markdown_github/over time-1.png
analysis/reports/dis_ts_files/figure-markdown_github/over time-2.png
analysis/reports/rarefaction.Rmd
analysis/reports/rarefaction.md
analysis/reports/rarefaction_files/figure-markdown_github/conclusions 1 to 1 plot-1.png
analysis/reports/rarefaction_files/figure-markdown_github/conclusions sensitivity-1.png
analysis/reports/rarefaction_files/figure-markdown_github/conclusions sensitivity-2.png
analysis/reports/rarefaction_files/figure-markdown_github/conclusions sensitivity-3.png
analysis/reports/rarefaction_files/figure-markdown_github/conclusions sensitivity-4.png
analysis/reports/rarefaction_files/figure-markdown_github/percentile change v fs size-1.png
analysis/reports/rarefaction_files/figure-markdown_github/percentile change v fs size-2.png
analysis/reports/rarefaction_files/figure-markdown_github/percentile change v fs size-3.png
analysis/reports/rarefaction_files/figure-markdown_github/plot singleton v raw-1.png
analysis/reports/rarefaction_files/figure-markdown_github/rarefaction-1.png
analysis/reports/rarefaction_files/figure-markdown_github/rarefaction-2.png
analysis/reports/rarefaction_files/figure-markdown_github/simp 1 to 1-1.png
analysis/reports/rarefaction_files/figure-markdown_github/singletons 1to1-1.png
analysis/reports/rarefaction_files/figure-markdown_github/skew 1 to 1-1.png
analysis/reports/rarefaction_files/figure-markdown_github/skewness bottom-1.png
analysis/reports/statevars.Rmd
analysis/reports/statevars.md
analysis/reports/statevars_files/figure-markdown_github/get smaller years-1.png
analysis/reports/statevars_files/figure-markdown_github/histograms-1.png
analysis/reports/statevars_files/figure-markdown_github/histograms-2.png
analysis/reports/statevars_files/figure-markdown_github/load stuff-1.png
man/add_dis.Rd
man/add_singletons.Rd
man/add_skew.Rd
man/build_p_table.Rd
man/count_below.Rd
man/get_all_cds.Rd
man/get_all_coeffs.Rd
man/get_percentile.Rd
man/get_percentiles.Rd
man/get_plant_sad.Rd
man/pipe.Rd
man/sample_fs_long.Rd
scadsplants.Rproj
slurm_batchtools.tmpl
submit_pipeline.sbatch
