API for dkainer/RWRtoolkit
Random Walk with Restart Tool Suite
| Global functions | |
|---|---|
| RWR | Source code |
| RWR_CV | Man page Source code |
| RWR_LOE | Man page Source code |
| RWR_ShortestPaths | Man page Source code |
| RWR_make_multiplex | Man page Source code |
| RWR_netstats | Man page Source code |
| RWR_network_aggregation | Man page Source code |
| area_under_curve | Source code |
| basic_statistics_multiplex | Man page Source code |
| calc_ROCPRC | Source code |
| calc_metrics_cv | Source code |
| calc_metrics_loe | Source code |
| calculate_average_rank_across_folds_cv | Source code |
| calculate_basic_statistics | Man page Source code |
| calculate_max_precision | Source code |
| calculate_path_df | Source code |
| calculate_tau | Man page Source code |
| check_weighted_edges | Source code |
| chunk | Source code |
| compare_networks | Man page Source code |
| create_individual_path_df | Source code |
| create_rankings_cv | Source code |
| dump_layers | Source code |
| dump_nodes | Source code |
| exclusivity | Man page Source code |
| extract_highest_scoring_path | Man page Source code |
| extract_lo_and_seed_genes_cv | Source code |
| extract_node_from_row | Source code |
| generate_randomset | Source code |
| get_base_name | Source code |
| get_file_path | Source code |
| get_name | Man page Source code |
| get_or_set_tau | Source code |
| get_shortest_paths | Source code |
| jaccard_score_edges | Man page Source code |
| load_flist | Man page Source code |
| load_geneset | Source code |
| load_multiplex_data | Source code |
| load_network | Man page Source code |
| make_dummy_multiplex | Man page Source code |
| make_heterogeneous_multiplex | Source code |
| make_homogenous_network | Source code |
| make_multiplex | Source code |
| merged_with_all_edges | Man page Source code |
| merged_with_edgecounts | Man page Source code |
| open_cytoscape | Source code |
| overlap_many_pairwise | Man page Source code |
| overlap_many_vs_reference | Man page Source code |
| overlap_pair | Man page Source code |
| overlap_score | Man page Source code |
| parameters_exist | Source code |
| post_process_rwr_output_cv | Source code |
| read_flist | Source code |
| save_plots_cv | Source code |
| save_plots_loe | Source code |
| save_results | Source code |
| update_folds_by_method | Source code |
| view_top_network_loe | Source code |
| vplayout | Source code |
| write_networks_to_file_if_fp | Source code |
| write_stats_to_file_if_fp | Source code |
| write_table | Source code |
