API for dorolin/rearrvisr
Detect, Classify, and Visualize Genome Rearrangements
| Global functions | |
|---|---|
| MEL_markers | Man page |
| MSSYE_PQTREE_HEUR | Man page |
| SIM_markers | Man page |
| TOY24_compgenome | Man page |
| TOY24_focalgenome | Man page |
| YAK_markers | Man page |
| adjustTPtags | Source code |
| appendData | Source code |
| assignOri3 | Source code |
| assignOriTwoElem | Source code |
| checkAdjAscend | Source code |
| checkAdjComplexRearr | Source code |
| checkAdjDescend | Source code |
| checkInfile | Man page Source code |
| checkOriAscend | Source code |
| checkOriDescend | Source code |
| computeRearrs | Man page Source code |
| convertPQtree | Man page Source code |
| filterCars3 | Source code |
| filterRearrs | Man page Source code |
| findInsert | Source code |
| findOri | Source code |
| genome2PQtree | Man page Source code |
| genomeImagePlot | Man page Source code |
| genomeRearrPlot | Man page Source code |
| getBestHits | Source code |
| getBreakpnts2BP | Source code |
| getBreakpntsSE | Source code |
| getBreakpoints | Man page Source code |
| getGapsFlanks | Source code |
| getSingles | Source code |
| keepBlocks | Source code |
| makeBlocks | Source code |
| makePreMasks | Source code |
| makeScafOrd | Source code |
| makeTPtags | Source code |
| myRank | Source code |
| orderGenomeMap | Man page Source code |
| rearrvisr | Man page |
| rearrvisr-package | Man page |
| removeZeros | Source code |
| setMasks | Source code |
| setRearrPlot | Source code |
| simplifyBlockTags | Source code |
| summarizeBlocks | Man page Source code |
| summarizeRearrs | Man page Source code |
| summarizeTags | Source code |
| tagLeaf | Source code |
| tagRearr | Source code |
| tagTLcar2 | Source code |
| tagTP2 | Source code |
