Man pages for dorolin/rearrvisr
Detect, Classify, and Visualize Genome Rearrangements
| checkInfile | Check input files |
| computeRearrs | Compute Rearrangements |
| convertPQtree | Convert linearly encoded _PQ-trees_ into a two-dimensional... |
| filterRearrs | Filter Rearrangements |
| genome2PQtree | Convert a one-dimensional genome map into a two-dimensional... |
| genomeImagePlot | Genome Image Plot |
| genomeRearrPlot | Genome Rearrangements Plot |
| getBreakpoints | Get Breakpoints |
| MEL_markers | Focal genome map (i.e., 'focalgenome') of _Drosophila... |
| MSSYE_PQTREE_HEUR | Linearly encoded _PQ-tree_ of the _Drosophila_ ancestral... |
| orderGenomeMap | Order genome map |
| rearrvisr | rearrvisr: A package to detect, classify, and visualize... |
| SIM_markers | Focal genome map (i.e., 'focalgenome') of _Drosophila... |
| summarizeBlocks | Summarize Synteny Blocks |
| summarizeRearrs | Summarize Rearrangements |
| TOY24_compgenome | 'compgenome' example for 24 markers, created for illustrative... |
| TOY24_focalgenome | 'focalgenome' example for 24 markers, created for... |
| YAK_markers | Focal genome map (i.e., 'focalgenome') of _Drosophila yakuba_ |
