Man pages for dr-consulting/ibi_VizEdit
Open-Source Software for Processing and Editing Heart Rate Data
| addIbiFooter | Utility for 'ibiVizEdit' that generates footer note at the... |
| addLogo | UI utility for 'ibiVizEdit' that renders the Dead Reckoning... |
| addMainFooter | UI utility for 'ibiVizEdit' that adds a note about... |
| add_MAP_summaries | Internal 'ibiVizEdit' utility for appending summary data from... |
| addPpgFooter | Utility for 'ibiVizEdit' that generates footer note at the... |
| add_ppg_waveform | Internal 'ibiVizEdit' utility that adds PPG to plot |
| addProcessingFooter | UI utility for 'ibiVizEdit' that renders a footer for the... |
| add_task_v_lines | Internal utility for modifying gui plot |
| app_server | The application server-side |
| app_sys | Access files in the current app |
| app_ui | The application User-Interface |
| average_button_action | Server side function to facilitate averaging multiple points |
| AVERAGE_RESPIRATION_BY_AGE | Prior boundaries based on average respiration rates for each... |
| basic_ppg | Server-side utility for 'ibiVizEdit' that dynamically updates... |
| BUTTON_COLORS | Vector that specifies three basic color templates based on... |
| BUTTON_STATUS | Initialization of BUTTON_STATUS reactiveValues used... |
| check_for_large_rhats | Internal 'ibiVizEdit' utility for identying large Rhat... |
| click_point_selection | Server side function that "collects" points for editing when... |
| click_ppg_editing | Server side function that enables manual addition and removal... |
| combine_button_action | Server side function to facilitate combining multiple points |
| create_and_return_gp_output_subdir | Internal 'ibiVizEdit' utility for creating an subdirectory... |
| create_and_return_output_dir | Internal 'ibiVizEdit' utility for creating output directory... |
| create_and_return_screenshot_dir | Internal 'ibiVizEdit' utility for creating screenshot... |
| create_gui_timing_table | Utility function for transforming timing file inputs into... |
| CURRENT_NAME_VERSION | Configuration variable - solely for inclusion in the main... |
| dataEntryActionButtons | UI utility for 'ibiVizEdit' that generates data entry... |
| divide_button_action | Server side function to facilitate division of a single point |
| DOCS_LINK | Link to the docs - going to need a significant overhaul |
| downsample_ppg_data | Internal utility that creates a down-sampled data.frame of... |
| drag_point_collection | Server side function that "collects" points for editing when... |
| dynamicCheckBoxInputMod | Server Shiny Module for 'ibiVizEdit' that serves as a basic... |
| dynamicCheckBoxInputModUI | UI Shiny Module for 'ibiVizEdit' that serves as a basic... |
| dynamicClrButtonMod | Server module for 'ibiVizEdit' that dynamically switches... |
| dynamicClrButtonModUI | UI module for 'ibiVizEdit' that serves as a basic wrapper and... |
| DYNAMIC_DATA | Initialization of DYNAMIC_DATA reactiveValues that can change... |
| EPOCH_CHOICES | Settings for the epochs users can request to have the output... |
| EPOCH_SELECTED | Defaults for epoch lengths in output files. |
| estimate_average_HR | Internal utility for 'ibiVizEdit' that generates a global... |
| estimate_avg_respiration | Internal utility for determing average respiration jointly... |
| estimate_max_density | Internal utility for estimating mode of posterior... |
| eventTriggerMod | Server-side utility for 'ibiVizEdit' that enables Event... |
| extract_ibi_editing_info | Server side function to extract necessary information from... |
| extract_valid_local_HP_stats | Internal utility for extracting local HP mean and sd based on... |
| fileButtons | UI utility for 'ibiVizEdit' that generates a series of file... |
| FILE_SETTINGS | Initialization of FILE_SETTINGS reactiveValues used... |
| filter_ppg | Internal utility that attempts to maximize raw signal... |
| find_ibis | Integrated function for generating interbeat interval... |
| find_peaks | General peak detection algorithm. |
| generate_base_gui_plot | Internal utility for gui plot generation |
| generate_gp_ppg_predictions | Internal 'ibiVizEdit' utility for selecting maximum a... |
| generate_heads_up_info | Server-side utility for 'ibiVizEdit' that updates summary... |
| generate_imputation_input_windows | Internal utility for maximizing imputation data range |
| generate_imputation_time | Internal utility for defining time variable over which to... |
| generate_model_ppg_inputs | Internal utility for generating imputation input data |
| generate_path_messages | Server-side utility for 'ibiVizEdit' that outputs relevant... |
| generate_ppg_data_check_plot | Internal utility for plot generation |
| get_golem_config | Read App Config |
| get_user_folder | Finding user home directory. |
| get_working_directory | Sever-side utility for 'ibiVizEdit' that observes and updates... |
| golem_add_external_resources | Add external Resources to the Application |
| gp_impute_driver | Internal utility that aggregates data and settings needed to... |
| highlight_ibis | Internal 'ibiVizEdit' utility that enables dynamic color... |
| hover_point_selection | Server side function to acquire hover points |
| ibi_editing_plot | Server-side utility for 'ibiVizEdit' that dynamically updates... |
| ibiEditingPlots | Utility for 'ibiVizEdit' that generates main editing plots... |
| ibiEditingTools | Utility for 'ibiVizEdit' that gemerates UI components for ibi... |
| IBI_POINT_COLORS | Central location for IBI point colors used throughout the... |
| ibi_value_label | Internal utility for generating dynamic text label... |
| idNameFields | UI utility for 'ibiVizEdit' that generates fields for ID,... |
| IMPUTE_DATA | Imputation data - should be ephemeral though certain... |
| LOAD_BUTTON_MESSAGE | Message to display underneath "Load" button |
| load_files_and_settings | Server-side utility for 'ibiVizEdit' that loads data using... |
| load_ppg | Internal utility for loading raw photoplethysmogram (PPG)... |
| load_timing_data | Internal utility for loading timing file |
| META_DATA | Initialization of META_DATA reactiveValues used throughout... |
| optionalSettingsEntry | UI utility for 'ibiVizEdit' that generates data entry fields... |
| ppg_data_check_empty_plot | Internal utility for defualt plot message generation |
| ppgDataPropertiesEntry | UI utility for 'ibiVizEdit' that generates data entry fields... |
| ppg_editing_plot | Server-side utility for 'ibiVizEdit' that defines main PPG... |
| ppgEditingPlots | Utility for 'ibiVizEdit' that generates main editing plots... |
| ppgEditingTools | Utility for 'ibiVizEdit' that generates UI components for ibi... |
| preProcessPlots | Utility for 'ibiVizEdit' that defines plots for... |
| preProcessTables | Utility for 'ibiVizEdit' that defines tables for... |
| PROCESSING_DEFAULTS | Presets for the inputs |
| raise_not_in_range_integer | Internal 'ibiVizEdit' utility that generates a warning if an... |
| range01 | Set min/max to 0/1. |
| replace_w_imputed | Internal 'ibiVizEdit' function for replacing corrupted data... |
| REPO_LINK | Link to the repo |
| RESET_ALL_MESSAGE | Message to display underneath "Reset" button |
| restore_button_action | Server side utility that takes restores all IBIs within the... |
| return_stan_code | Internal 'ibiVizEdit' utility for generating the GP... |
| run_app | Run the Shiny Application |
| run_bayesian_gp | Internal 'ibiVizEdit' utility for running a Bayesian Gaussian... |
| save_gp_imputation_traceplots | Internal 'ibiVizEdit' utility for generating diagnostic... |
| save_model_summary_as_text | Internal 'ibiVizEdit' utility for generation a model output... |
| SAVE_OUT_BUTTON_MESSAGE | Message to display underneath "Save and Output" button |
| SAVE_PROG_BUTTON_MESSAGE | Message to display underneath "Save Progress" button |
| save_screenshot | Server side function that takes and saves screenshot in a... |
| set_file_size_max | Setting maximum file size |
| STATIC_DATA | Initialization of STATIC_DATA reactiveValues that, once... |
| store_raw_data_filepath | Server-side utility for 'ibiVizEdit' that observes and... |
| SUMMARY_STATS | Initialization of SUMMARY_STATS reactiveValues used to store... |
| sum_rev | Internal utility for creating IBI time-series. |
| TAG_LINE | Configuration setting - Tagline for the application header |
| TEMP_GRAPHICS_SETTINGS | Initialization of TEMP_GRAPHICS_SETTINGS reactiveValues that... |
| THUMB_LOGO | Location of the thumbnail - used mainly as the favicon |
| time_center | Internal utility for ibiVizEdit that centers PPG and IBI... |
| time_diff | Internal utility that creates IBI values from the find_peaks... |
| track_data_text_entry | Server-side utility for 'ibiVizEdit' that tracks and updates... |
| track_editing_options | Server side function that tracks and updates the status of... |
| TRIGGERS | Initiatlization of a set of TRIGGERS reactiveValues used in... |
| trim_ppg_window | Internal utility that trims down the time range of the PPG... |
| turn_on_load_button | Server-side utility for 'ibiVizEdit' that turns on "load"... |
| uneditable_button_action | Server side utility that marks selected points as uneditable |
| WIDE_LOGO | Location of the main Dead Reckoning logo |
| WIKI_LINK | Link to the wiki - needs to be considerably added to |
