Files in drostlab/rdiamond
Seamless Integration of DIAMOND2 Sequence Searches in R
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/blast_outfmt_colnames.R
R/diamond_protein_against_ncbi_nr.R
R/diamond_protein_to_protein.R
R/diamond_protein_to_protein_best_hits.R
R/diamond_protein_to_protein_best_reciprocal_hit.R
R/file_contains_aa.R
R/file_contains_dna.R
R/filter_best_hits.R
R/is_diamond_installed.R
R/is_ncbi_nr_installed.R
R/is_outformat.R
R/list_outformats.R
R/outformat2num.R
R/read_diamond.R
R/ws_wrap.R
README.md
docs/404.html
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/diamond_protein_against_ncbi_nr.html
docs/reference/diamond_protein_to_protein.html
docs/reference/diamond_protein_to_protein_best_hits.html
docs/reference/diamond_protein_to_protein_best_reciprocal_hits.html
docs/reference/figures/logo.png
docs/reference/file_contains_aa.html
docs/reference/file_contains_dna.html
docs/reference/filter_best_hits.html
docs/reference/index.html
docs/reference/list_outformats.html
docs/reference/read_diamond.html
docs/sitemap.xml
inst/seqs/ortho_lyra_aa.fasta
inst/seqs/ortho_thal_aa.fasta
inst/seqs/qry_aa.fa
inst/seqs/qry_nn.fa
inst/seqs/sbj_aa.fa
inst/seqs/sbj_nn.fa
inst/seqs/sbj_nn_best_hit.fa
man/diamond_protein_against_ncbi_nr.Rd
man/diamond_protein_to_protein.Rd
man/diamond_protein_to_protein_best_hits.Rd
man/diamond_protein_to_protein_best_reciprocal_hits.Rd
man/figures/logo.png
man/file_contains_aa.Rd
man/file_contains_dna.Rd
man/filter_best_hits.Rd
man/list_outformats.Rd
man/read_diamond.Rd
ortho_lyra_aa_ortho_thal_aa_blastp_eval_1E-5.blast_tbl
ortho_thal_aa_ortho_lyra_aa_blastp_eval_1E-5.blast_tbl
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
src/.gitignore
tests/testthat.R
tests/testthat/test-diamond_protein_to_protein.R
