Files in dylanrussellmd/nsqipr
Interact with NSQIP data via R

.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
.lintr
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE.md
NAMESPACE
R/col_definitions.R R/conv_aaa.R R/conv_aie.R R/conv_aio.R R/conv_app.R R/conv_col.R R/conv_hep.R R/conv_pan.R R/conv_puf.R R/conv_standard.R R/data_wrangling.R R/dindo.R R/long.R R/nsqip.R R/nsqipr.R R/output.R R/pb.R R/utils-cols.R R/utils-conv.R R/utils-files.R R/utils-long.R R/utils-tar.R R/utils.R README.Rmd README.md
_pkgdown.yml
inst/CITATION
inst/WORDLIST
inst/figures/race_comp.rda
inst/joss/apa.csl
inst/joss/paper.Rmd
inst/joss/paper.bib
inst/joss/paper.log
inst/joss/paper.md inst/joss/paper.pdf inst/joss/paper_files/figure-latex/unnamed-chunk-1-1.pdf man/addmissingcolumns.Rd man/bmi.Rd man/checkAnyDead.Rd man/checkAnyTrue.Rd man/checkTrue.Rd man/check_comaneurograft.Rd man/check_if_in.Rd man/coalesce.Rd man/coalesce_cols.Rd man/collect_column_names.Rd man/colorder.Rd man/conv_.Rd man/conv_aaa_cols.Rd man/conv_aaa_iculos.Rd man/conv_age.Rd man/conv_aie_cols.Rd man/conv_aio_cols.Rd man/conv_app_abscess.Rd man/conv_app_cols.Rd man/conv_app_img_ct.Rd man/conv_app_img_mri.Rd man/conv_app_img_ultra.Rd man/conv_app_intraabscess.Rd man/conv_app_intraabscess_intervention.Rd man/conv_app_perforation.Rd man/conv_col_anastomotic.Rd man/conv_col_cols.Rd man/conv_col_leak_treatment.Rd man/conv_complication.Rd man/conv_date.Rd man/conv_factor.Rd man/conv_hep_bileleakage.Rd man/conv_hep_bileleakage_intervention.Rd man/conv_hep_bileleakage_type.Rd man/conv_hep_cols.Rd man/conv_hep_con_partres.Rd man/conv_hep_hepb.Rd man/conv_hep_hepc.Rd man/conv_hep_liverfail.Rd man/conv_hep_liverfail_type.Rd man/conv_hep_otherviral.Rd man/conv_hep_sec_numtumors.Rd man/conv_hispanic.Rd man/conv_inout.Rd man/conv_notno.Rd man/conv_numscale.Rd man/conv_open_assist.Rd man/conv_pan_cols.Rd man/conv_pan_delgastric.Rd man/conv_pan_fistula.Rd man/conv_pan_fistula_intervention.Rd man/conv_pan_fistula_type.Rd man/conv_puf_cols.Rd man/conv_race.Rd man/conv_to_standard.Rd man/conv_unplanned_conversion.Rd man/conv_yesno.Rd man/convert_col_to_integer.Rd man/create_dirs.Rd man/dindo.Rd man/extract_number_from_column.Rd man/factorpipe.Rd
man/figures/README-nsqip_hits_graph.png
man/figures/README-nsqip_journal_circular.png
man/figures/banner.png
man/figures/hex.png
man/get_file_or_dir.Rd man/get_pufyear.Rd man/grapes-qsin-grapes.Rd man/insulin.Rd man/isDead.Rd man/isFullDT.Rd man/make_amylase_long.Rd man/make_anesthes_other_long.Rd man/make_cols_long.Rd man/make_commas_long.Rd man/make_cpt_long.Rd man/make_hep_con_ablation_long.Rd man/make_hep_invasive_type_long.Rd man/make_hep_neotherapy_long.Rd man/make_long_cols.Rd man/make_pan_percdrainage_cols.Rd man/make_pan_percdrainage_long.Rd man/make_readm_long.Rd man/make_reop_long.Rd man/move_files.Rd man/nsqip.Rd man/nsqip_dir.Rd man/nsqipr.Rd man/parse_filename.Rd man/parse_files.Rd man/pb.Rd man/remove_undesired.Rd man/setlowernames.Rd man/tick.Rd man/type_prsepis.Rd man/when_dyspnea.Rd
nsqipr.Rproj
tests/spelling.R tests/testthat.R tests/testthat/helper.R tests/testthat/setup.R tests/testthat/test-conv_aaa.R tests/testthat/test-conv_app.R tests/testthat/test-conv_col.R tests/testthat/test-conv_pan.R tests/testthat/test-conv_puf.R
tests/testthat/test-data/ACS_NSQIP_PUF07_TXT.txt
tests/testthat/test-data/ACS_NSQIP_PUF07_TXT_clean.rds
tests/testthat/test-data/ACS_NSQIP_PUF07_TXT_cpt.rds
tests/testthat/test-data/ACS_NSQIP_PUF08_TXT.txt
tests/testthat/test-data/ACS_NSQIP_PUF08_TXT_clean.rds
tests/testthat/test-data/ACS_NSQIP_PUF08_TXT_cpt.rds
tests/testthat/test-data/ACS_NSQIP_PUF09_TXT.txt
tests/testthat/test-data/ACS_NSQIP_PUF09_TXT_clean.rds
tests/testthat/test-data/ACS_NSQIP_PUF09_TXT_cpt.rds
tests/testthat/test-data/ACS_NSQIP_PUF10_TXT.txt
tests/testthat/test-data/ACS_NSQIP_PUF10_TXT_clean.rds
tests/testthat/test-data/ACS_NSQIP_PUF10_TXT_cpt.rds
tests/testthat/test-data/ACS_NSQIP_PUF11_TXT.txt
tests/testthat/test-data/ACS_NSQIP_PUF11_TXT_clean.rds
tests/testthat/test-data/ACS_NSQIP_PUF11_TXT_cpt.rds
tests/testthat/test-data/ACS_NSQIP_PUF11_TXT_readmission.rds
tests/testthat/test-data/ACS_NSQIP_PUF11_TXT_reoperation.rds
tests/testthat/test-data/ACS_NSQIP_PUF_05_06_vr1.txt
tests/testthat/test-data/ACS_NSQIP_PUF_05_06_vr1_clean.rds
tests/testthat/test-data/ACS_NSQIP_PUF_05_06_vr1_cpt.rds
tests/testthat/test-data/acs_nsqip_puf12.txt
tests/testthat/test-data/acs_nsqip_puf12_clean.rds
tests/testthat/test-data/acs_nsqip_puf12_cpt.rds
tests/testthat/test-data/acs_nsqip_puf12_readmission.rds
tests/testthat/test-data/acs_nsqip_puf12_reoperation.rds
tests/testthat/test-data/acs_nsqip_puf13.txt
tests/testthat/test-data/acs_nsqip_puf13_clean.rds
tests/testthat/test-data/acs_nsqip_puf13_cpt.rds
tests/testthat/test-data/acs_nsqip_puf13_readmission.rds
tests/testthat/test-data/acs_nsqip_puf13_reoperation.rds
tests/testthat/test-data/acs_nsqip_puf14.txt
tests/testthat/test-data/acs_nsqip_puf14_anesthes_other.rds
tests/testthat/test-data/acs_nsqip_puf14_clean.rds
tests/testthat/test-data/acs_nsqip_puf14_cpt.rds
tests/testthat/test-data/acs_nsqip_puf14_readmission.rds
tests/testthat/test-data/acs_nsqip_puf14_reoperation.rds
tests/testthat/test-data/acs_nsqip_puf15_v2.txt
tests/testthat/test-data/acs_nsqip_puf15_v2_anesthes_other.rds
tests/testthat/test-data/acs_nsqip_puf15_v2_clean.rds
tests/testthat/test-data/acs_nsqip_puf15_v2_cpt.rds
tests/testthat/test-data/acs_nsqip_puf15_v2_readmission.rds
tests/testthat/test-data/acs_nsqip_puf15_v2_reoperation.rds
tests/testthat/test-data/acs_nsqip_puf16.txt
tests/testthat/test-data/acs_nsqip_puf16_anesthes_other.rds
tests/testthat/test-data/acs_nsqip_puf16_clean.rds
tests/testthat/test-data/acs_nsqip_puf16_cpt.rds
tests/testthat/test-data/acs_nsqip_puf16_readmission.rds
tests/testthat/test-data/acs_nsqip_puf16_reoperation.rds
tests/testthat/test-data/acs_nsqip_puf17.txt
tests/testthat/test-data/acs_nsqip_puf17_anesthes_other.rds
tests/testthat/test-data/acs_nsqip_puf17_clean.rds
tests/testthat/test-data/acs_nsqip_puf17_cpt.rds
tests/testthat/test-data/acs_nsqip_puf17_readmission.rds
tests/testthat/test-data/acs_nsqip_puf17_reoperation.rds
tests/testthat/test-data/acs_nsqip_puf18_v2.txt
tests/testthat/test-data/acs_nsqip_puf18_v2_anesthes_other.rds
tests/testthat/test-data/acs_nsqip_puf18_v2_clean.rds
tests/testthat/test-data/acs_nsqip_puf18_v2_cpt.rds
tests/testthat/test-data/acs_nsqip_puf18_v2_readmission.rds
tests/testthat/test-data/acs_nsqip_puf18_v2_reoperation.rds
tests/testthat/test-data/acs_nsqip_puf19.txt
tests/testthat/test-data/acs_nsqip_puf19_anesthes_other.rds
tests/testthat/test-data/acs_nsqip_puf19_clean.rds
tests/testthat/test-data/acs_nsqip_puf19_cpt.rds
tests/testthat/test-data/acs_nsqip_puf19_readmission.rds
tests/testthat/test-data/acs_nsqip_puf19_reoperation.rds
tests/testthat/test-data/acs_nsqip_puf20.txt
tests/testthat/test-data/acs_nsqip_puf20_anesthes_other.rds
tests/testthat/test-data/acs_nsqip_puf20_clean.rds
tests/testthat/test-data/acs_nsqip_puf20_cpt.rds
tests/testthat/test-data/acs_nsqip_puf20_readmission.rds
tests/testthat/test-data/acs_nsqip_puf20_reoperation.rds
tests/testthat/test-data/acs_nsqip_puf21.txt
tests/testthat/test-data/acs_nsqip_puf21_anesthes_other.rds
tests/testthat/test-data/acs_nsqip_puf21_clean.rds
tests/testthat/test-data/acs_nsqip_puf21_cpt.rds
tests/testthat/test-data/acs_nsqip_puf21_readmission.rds
tests/testthat/test-data/acs_nsqip_puf21_reoperation.rds
tests/testthat/test-data/puf_tar_aaa_2011_clean.rds
tests/testthat/test-data/puf_tar_aaa_2012_clean.rds
tests/testthat/test-data/puf_tar_aaa_2013_clean.rds
tests/testthat/test-data/puf_tar_aaa_2014_clean.rds
tests/testthat/test-data/puf_tar_aaa_2015_clean.rds
tests/testthat/test-data/puf_tar_aaa_2016_clean.rds
tests/testthat/test-data/puf_tar_aaa_2017_clean.rds
tests/testthat/test-data/puf_tar_aaa_2018_clean.rds
tests/testthat/test-data/puf_tar_aaa_2019_clean.rds
tests/testthat/test-data/puf_tar_aaa_2020_clean.rds
tests/testthat/test-data/puf_tar_aaa_2021_clean.rds
tests/testthat/test-data/puf_tar_aie_2011_clean.rds
tests/testthat/test-data/puf_tar_aie_2012_clean.rds
tests/testthat/test-data/puf_tar_aie_2013_clean.rds
tests/testthat/test-data/puf_tar_aie_2014_clean.rds
tests/testthat/test-data/puf_tar_aie_2015_clean.rds
tests/testthat/test-data/puf_tar_aie_2016_clean.rds
tests/testthat/test-data/puf_tar_aie_2017_clean.rds
tests/testthat/test-data/puf_tar_aie_2018_clean.rds
tests/testthat/test-data/puf_tar_aie_2019_clean.rds
tests/testthat/test-data/puf_tar_aie_2020_clean.rds
tests/testthat/test-data/puf_tar_aie_2021_clean.rds
tests/testthat/test-data/puf_tar_aio_2011_clean.rds
tests/testthat/test-data/puf_tar_aio_2012_clean.rds
tests/testthat/test-data/puf_tar_aio_2013_clean.rds
tests/testthat/test-data/puf_tar_aio_2014_clean.rds
tests/testthat/test-data/puf_tar_aio_2015_clean.rds
tests/testthat/test-data/puf_tar_aio_2016_clean.rds
tests/testthat/test-data/puf_tar_aio_2017_clean.rds
tests/testthat/test-data/puf_tar_aio_2018_clean.rds
tests/testthat/test-data/puf_tar_aio_2019_clean.rds
tests/testthat/test-data/puf_tar_aio_2020_clean.rds
tests/testthat/test-data/puf_tar_aio_2021_clean.rds
tests/testthat/test-data/puf_tar_app_2016.txt
tests/testthat/test-data/puf_tar_app_2016_clean.rds
tests/testthat/test-data/puf_tar_app_2017.txt
tests/testthat/test-data/puf_tar_app_2017_clean.rds
tests/testthat/test-data/puf_tar_app_2018.txt
tests/testthat/test-data/puf_tar_app_2018_clean.rds
tests/testthat/test-data/puf_tar_app_2019.txt
tests/testthat/test-data/puf_tar_app_2019_clean.rds
tests/testthat/test-data/puf_tar_app_2020.txt
tests/testthat/test-data/puf_tar_app_2020_clean.rds
tests/testthat/test-data/puf_tar_app_2021.txt
tests/testthat/test-data/puf_tar_app_2021_clean.rds
tests/testthat/test-data/puf_tar_col_2012.txt
tests/testthat/test-data/puf_tar_col_2012_clean.rds
tests/testthat/test-data/puf_tar_col_2013.txt
tests/testthat/test-data/puf_tar_col_2013_clean.rds
tests/testthat/test-data/puf_tar_col_2014.txt
tests/testthat/test-data/puf_tar_col_2014_clean.rds
tests/testthat/test-data/puf_tar_col_2015.txt
tests/testthat/test-data/puf_tar_col_2015_clean.rds
tests/testthat/test-data/puf_tar_col_2016.txt
tests/testthat/test-data/puf_tar_col_2016_clean.rds
tests/testthat/test-data/puf_tar_col_2017.txt
tests/testthat/test-data/puf_tar_col_2017_clean.rds
tests/testthat/test-data/puf_tar_col_2018.txt
tests/testthat/test-data/puf_tar_col_2018_clean.rds
tests/testthat/test-data/puf_tar_col_2019.txt
tests/testthat/test-data/puf_tar_col_2019_clean.rds
tests/testthat/test-data/puf_tar_col_2020.txt
tests/testthat/test-data/puf_tar_col_2020_clean.rds
tests/testthat/test-data/puf_tar_col_2021.txt
tests/testthat/test-data/puf_tar_col_2021_clean.rds
tests/testthat/test-data/puf_tar_hep_2014_clean.rds
tests/testthat/test-data/puf_tar_hep_2014_con_ablation.rds
tests/testthat/test-data/puf_tar_hep_2014_invasive_type.rds
tests/testthat/test-data/puf_tar_hep_2014_neotherapy.rds
tests/testthat/test-data/puf_tar_hep_2015_clean.rds
tests/testthat/test-data/puf_tar_hep_2015_con_ablation.rds
tests/testthat/test-data/puf_tar_hep_2015_invasive_type.rds
tests/testthat/test-data/puf_tar_hep_2015_neotherapy.rds
tests/testthat/test-data/puf_tar_hep_2016_update_clean.rds
tests/testthat/test-data/puf_tar_hep_2016_update_con_ablation.rds
tests/testthat/test-data/puf_tar_hep_2016_update_invasive_type.rds
tests/testthat/test-data/puf_tar_hep_2016_update_neotherapy.rds
tests/testthat/test-data/puf_tar_hep_2017_clean.rds
tests/testthat/test-data/puf_tar_hep_2017_con_ablation.rds
tests/testthat/test-data/puf_tar_hep_2017_invasive_type.rds
tests/testthat/test-data/puf_tar_hep_2017_neotherapy.rds
tests/testthat/test-data/puf_tar_hep_2018_clean.rds
tests/testthat/test-data/puf_tar_hep_2018_con_ablation.rds
tests/testthat/test-data/puf_tar_hep_2018_invasive_type.rds
tests/testthat/test-data/puf_tar_hep_2018_neotherapy.rds
tests/testthat/test-data/puf_tar_hep_2019_v2_clean.rds
tests/testthat/test-data/puf_tar_hep_2019_v2_con_ablation.rds
tests/testthat/test-data/puf_tar_hep_2019_v2_invasive_type.rds
tests/testthat/test-data/puf_tar_hep_2019_v2_neotherapy.rds
tests/testthat/test-data/puf_tar_hep_2020_clean.rds
tests/testthat/test-data/puf_tar_hep_2020_con_ablation.rds
tests/testthat/test-data/puf_tar_hep_2020_invasive_type.rds
tests/testthat/test-data/puf_tar_hep_2020_neotherapy.rds
tests/testthat/test-data/puf_tar_hep_2021_clean.rds
tests/testthat/test-data/puf_tar_hep_2021_con_ablation.rds
tests/testthat/test-data/puf_tar_hep_2021_invasive_type.rds
tests/testthat/test-data/puf_tar_hep_2021_neotherapy.rds
tests/testthat/test-data/puf_tar_pan_2014_amylase.rds
tests/testthat/test-data/puf_tar_pan_2014_clean.rds
tests/testthat/test-data/puf_tar_pan_2014_percdrainage.rds
tests/testthat/test-data/puf_tar_pan_2015_amylase.rds
tests/testthat/test-data/puf_tar_pan_2015_clean.rds
tests/testthat/test-data/puf_tar_pan_2015_percdrainage.rds
tests/testthat/test-data/puf_tar_pan_2016_amylase.rds
tests/testthat/test-data/puf_tar_pan_2016_clean.rds
tests/testthat/test-data/puf_tar_pan_2016_percdrainage.rds
tests/testthat/test-data/puf_tar_pan_2017_amylase.rds
tests/testthat/test-data/puf_tar_pan_2017_clean.rds
tests/testthat/test-data/puf_tar_pan_2017_percdrainage.rds
tests/testthat/test-data/puf_tar_pan_2018_amylase.rds
tests/testthat/test-data/puf_tar_pan_2018_clean.rds
tests/testthat/test-data/puf_tar_pan_2018_percdrainage.rds
tests/testthat/test-data/puf_tar_pan_2019_amylase.rds
tests/testthat/test-data/puf_tar_pan_2019_clean.rds
tests/testthat/test-data/puf_tar_pan_2019_percdrainage.rds
tests/testthat/test-data/puf_tar_pan_2020_amylase.rds
tests/testthat/test-data/puf_tar_pan_2020_clean.rds
tests/testthat/test-data/puf_tar_pan_2020_percdrainage.rds
tests/testthat/test-data/puf_tar_pan_2021_amylase.rds
tests/testthat/test-data/puf_tar_pan_2021_clean.rds
tests/testthat/test-data/puf_tar_pan_2021_percdrainage.rds
tests/testthat/test-dindo.R tests/testthat/test-long.R tests/testthat/test-nsqip.R tests/testthat/test-utils-conv.R tests/testthat/test-utils-tar.R tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/nsqipr.Rmd
dylanrussellmd/nsqipr documentation built on Oct. 13, 2023, 11:01 a.m.