API for dynverse/dynwrap
Representing and Inferring Single-Cell Trajectories
| Global functions | |
|---|---|
| .container_get_definition | Source code |
| .container_get_example | Source code |
| .method_close_sinks | Source code |
| .method_execute | Source code |
| .method_execution_execute_container | Source code |
| .method_execution_execute_function | Source code |
| .method_execution_execute_script | Source code |
| .method_execution_postproc_container | Source code |
| .method_execution_postproc_function | Source code |
| .method_execution_preproc_container | Source code |
| .method_execution_preproc_function | Source code |
| .method_extract_inputs | Source code |
| .method_extract_priors | Source code |
| .method_init_sinks | Source code |
| .method_load_definition | Source code |
| .method_process_definition | Man page Source code |
| add_attraction | Man page Source code |
| add_branch_trajectory | Man page Source code |
| add_cell_graph | Man page Source code |
| add_cell_waypoints | Man page Source code |
| add_cluster_graph | Man page Source code |
| add_cyclic_trajectory | Man page Source code |
| add_dimred | Man page Source code |
| add_dimred_projection | Man page Source code |
| add_end_state_probabilities | Man page Source code |
| add_expression | Man page Source code |
| add_feature_importance | Man page Source code |
| add_grouping | Man page Source code |
| add_linear_trajectory | Man page Source code |
| add_prior_information | Man page Source code |
| add_pseudotime | Man page Source code |
| add_regulatory_network | Man page Source code |
| add_root | Man page Source code |
| add_root_using_expression | Man page Source code |
| add_tde_overall | Man page Source code |
| add_timing_checkpoint | Man page Source code |
| add_timings | Man page Source code |
| add_trajectory | Man page Source code |
| add_waypoints | Man page |
| allowed_inputs | Man page |
| allowed_outputs | Man page |
| calculate_attraction | Man page Source code |
| calculate_average_by_group | Man page Source code |
| calculate_average_by_milestone_percentages | Source code |
| calculate_geodesic_distances | Man page Source code |
| calculate_geodesic_distances_ | Source code |
| calculate_pseudotime | Man page Source code |
| calculate_trajectory_dimred | Man page Source code |
| changed_topology | Source code |
| check_branch_network | Source code |
| check_branch_progressions | Source code |
| check_branches | Source code |
| check_divergence_regions | Source code |
| check_milestone_network | Source code |
| check_milestone_percentages | Source code |
| check_progressions | Source code |
| classify_milestone_network | Man page Source code |
| cluster_graph_add_explicit_splits | Source code |
| common_param | Man page |
| compute_tented_geodesic_distances | Man page Source code |
| connect_dimred_segments | Source code |
| convert_definition | Man page Source code |
| convert_expression | Source code |
| convert_milestone_percentages_to_progressions | Man page Source code |
| convert_progressions_to_milestone_percentages | Man page Source code |
| create_config | Man page |
| create_docker_config | Man page |
| create_singularity_config | Man page |
| create_ti_method_container | Man page Source code |
| create_ti_method_definition | Man page Source code |
| create_ti_method_r | Man page Source code |
| def_author | Man page Source code |
| def_container | Man page Source code |
| def_manuscript | Man page Source code |
| def_method | Man page Source code |
| def_package | Man page Source code |
| def_parameters | Man page |
| def_wrapper | Man page Source code |
| definition | Man page Source code |
| determine_cell_trajectory_positions | Man page Source code |
| determine_milenet_props | Source code |
| determine_network_type | Source code |
| dynwrap | Man page |
| example_dataset | Man page |
| example_trajectory | Man page |
| fix_windows_path | Source code |
| flip_edges | Man page Source code |
| gather_cells_at_milestones | Man page Source code |
| generate_parameter_documentation | Man page Source code |
| generate_prior_information | Man page Source code |
| get_default_config | Man page |
| get_default_parameters | Man page Source code |
| get_dimred | Man page Source code |
| get_expression | Man page Source code |
| get_grouping | Man page Source code |
| get_milestone_labelling | Man page Source code |
| get_ti_methods | Man page Source code |
| group_from_trajectory | Man page |
| group_onto_nearest_milestones | Man page Source code |
| group_onto_trajectory_edges | Man page Source code |
| has_cycle_function | Source code |
| infer_trajectories | Man page Source code |
| infer_trajectory | Man page |
| is_data_wrapper | Man page Source code |
| is_dynmethods_installed | Source code |
| is_rooted | Man page Source code |
| is_ti_method | Man page Source code |
| is_wrapper_with_dimred | Man page Source code |
| is_wrapper_with_expression | Man page Source code |
| is_wrapper_with_feature_importance | Man page Source code |
| is_wrapper_with_grouping | Man page Source code |
| is_wrapper_with_milestone_labelling | Man page Source code |
| is_wrapper_with_prior_information | Man page Source code |
| is_wrapper_with_timings | Man page Source code |
| is_wrapper_with_trajectory | Man page Source code |
| is_wrapper_with_waypoint_cells | Man page Source code |
| is_wrapper_with_waypoints | Man page |
| label_milestones | Man page Source code |
| label_milestones_markers | Man page Source code |
| pcor | Source code |
| prior_usages | Man page |
| priors | Man page |
| process_dimred | Source code |
| process_grouping | Source code |
| process_pseudotime | Source code |
| project_milestones | Man page Source code |
| project_trajectory | Man page Source code |
| project_waypoints | Man page Source code |
| random_seed | Man page Source code |
| reexports | Man page |
| remove_root | Man page Source code |
| select_waypoint_cells | Man page Source code |
| select_waypoints | Man page Source code |
| set_default_config | Man page |
| simplify_igraph_network | Man page Source code |
| simplify_trajectory | Man page Source code |
| test_docker_installation | Man page |
| test_h5_installation | Man page |
| test_singularity_installation | Man page |
| trajectory_type_dag | Man page |
| trajectory_types | Man page |
| wrap_data | Man page Source code |
| wrap_expression | Man page Source code |
| wrapper_types | Man page |
