Files in dzhang32/ggtranscript
Visualizing Transcript Structure and Annotation using 'ggplot2'
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
.pre-commit-config.yaml
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/add_exon_number.R
R/add_utr.R
R/data.R
R/geom_half_range.R
R/geom_intron.R
R/geom_junction.R
R/geom_junction_label_repel.R
R/geom_range.R
R/ggtranscript-package.R
R/globals.R
R/shorten_gaps.R
R/to_diff.R
R/to_intron.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
data-raw/ggplot2_exts_thumbnail.R
data-raw/ggtranscript_logo.R
data-raw/sod1_junctions.R
data-raw/sod1_pknox1_annotation.R
data/pknox1_annotation.rda
data/sod1_annotation.rda
data/sod1_junctions.rda
inst/CITATION
man/add_exon_number.Rd
man/add_utr.Rd
man/figures/README-geom-half-range-1.png
man/figures/README-geom-half-range-zoomed-1.png
man/figures/README-geom-junction-1.png
man/figures/README-geom-junction-pub-1.png
man/figures/README-geom-range-intron-1.png
man/figures/README-geom-range-intron-w-cds-1.png
man/figures/README-shorten-gaps-1.png
man/figures/dzhang32-ggtranscript.png
man/figures/ggtranscript_logo.png
man/figures/ggtranscript_logo_cropped.svg
man/geom_intron.Rd
man/geom_junction.Rd
man/geom_junction_label_repel.Rd
man/geom_range.Rd
man/ggtranscript.Rd
man/shorten_gaps.Rd
man/sod1_annotation.Rd
man/sod1_junctions.Rd
man/to_diff.Rd
man/to_intron.Rd
tests/testthat.R
tests/testthat/_snaps/add_utr/test-rescaled-with-utr-plot.svg
tests/testthat/_snaps/geom_half_range/base-geom-half-range-plot.svg
tests/testthat/_snaps/geom_half_range/with-aes-geom-half-range-plot.svg
tests/testthat/_snaps/geom_half_range/with-both-geom-half-range-plot.svg
tests/testthat/_snaps/geom_half_range/with-facet-geom-half-range-plot.svg
tests/testthat/_snaps/geom_half_range/with-param-geom-half-range-plot.svg
tests/testthat/_snaps/geom_half_range/with-top-geom-half-range-plot.svg
tests/testthat/_snaps/geom_intron/as-aes-strand-plot.svg
tests/testthat/_snaps/geom_intron/base-arrow-min-plot.svg
tests/testthat/_snaps/geom_intron/base-geom-intron-plot.svg
tests/testthat/_snaps/geom_intron/factor-strand-plot.svg
tests/testthat/_snaps/geom_intron/minus-strand-plot.svg
tests/testthat/_snaps/geom_intron/with-aes-geom-intron-plot.svg
tests/testthat/_snaps/geom_intron/with-facet-geom-intron-plot.svg
tests/testthat/_snaps/geom_intron/with-param-geom-intron-plot.svg
tests/testthat/_snaps/geom_intron/with-strand-arrow-min-plot.svg
tests/testthat/_snaps/geom_junction/0-5-junction-y-max-plot.svg
tests/testthat/_snaps/geom_junction/base-geom-junction-plot.svg
tests/testthat/_snaps/geom_junction/bottom-junction-orientation-plot.svg
tests/testthat/_snaps/geom_junction/top-junction-orientation-plot.svg
tests/testthat/_snaps/geom_junction/with-aes-and-param-0-5-junction-y-max-plot.svg
tests/testthat/_snaps/geom_junction/with-aes-and-param-top-junction-orientation-plot.svg
tests/testthat/_snaps/geom_junction/with-aes-geom-junction-plot.svg
tests/testthat/_snaps/geom_junction/with-facet-0-5-junction-y-max-plot.svg
tests/testthat/_snaps/geom_junction/with-facet-geom-junction-plot.svg
tests/testthat/_snaps/geom_junction/with-param-geom-junction-plot.svg
tests/testthat/_snaps/geom_junction_label_repel/base-geom-junction-label-repel-plot.svg
tests/testthat/_snaps/geom_junction_label_repel/with-aes-geom-junction-label-repel-plot.svg
tests/testthat/_snaps/geom_junction_label_repel/with-facet-geom-junction-label-repel-plot.svg
tests/testthat/_snaps/geom_junction_label_repel/with-param-geom-junction-label-repel-plot.svg
tests/testthat/_snaps/geom_range/base-geom-range-plot.svg
tests/testthat/_snaps/geom_range/with-aes-geom-range-plot.svg
tests/testthat/_snaps/geom_range/with-facet-geom-range-plot.svg
tests/testthat/_snaps/geom_range/with-param-geom-range-plot.svg
tests/testthat/_snaps/geom_range/with-vjust-geom-range-plot.svg
tests/testthat/_snaps/shorten_gaps/pknox1-rescaled-plot-1-tx-no-group.svg
tests/testthat/_snaps/shorten_gaps/pknox1-rescaled-plot-1-tx.svg
tests/testthat/_snaps/shorten_gaps/pknox1-rescaled-plot.svg
tests/testthat/_snaps/shorten_gaps/test-exons-rescaled-plot.svg
tests/testthat/_snaps/to_diff/multi-tx-diff-plot.svg
tests/testthat/_snaps/to_diff/single-tx-diff-plot.svg
tests/testthat/test-add_exon_number.R
tests/testthat/test-add_utr.R
tests/testthat/test-geom_half_range.R
tests/testthat/test-geom_intron.R
tests/testthat/test-geom_junction.R
tests/testthat/test-geom_junction_label_repel.R
tests/testthat/test-geom_range.R
tests/testthat/test-shorten_gaps.R
tests/testthat/test-to_diff.R
tests/testthat/test-to_intron.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/ggtranscript.Rmd
