Man pages for ebecht/ebmisc
Misc tools from and for Etienne Becht
| aggregate_df | Aggregates matrix or data frame |
| aucFromRules | Computes AUC from a vector of sorted values |
| color_biplot_by_channels | Colors points of a biplot (2d-tSNE, 2d-PCA...) by the... |
| color_biplot_by_discrete | Colors a biplot according to a vector with discrete values |
| create_namesfile_template | Create a 'names_template.csv' file from fcs files in the... |
| data_ranges | Computes data ranges for each channel of each flowFrame of a... |
| eb.autolgcl | Auto-logicle adapted from flowCore |
| en.FlowSOM | FlowSOM wrapper to call on matrices |
| en.load | Allows to bind the output of load() to a variable |
| en.locator | Wrapper to locator to properly plot segments on the fly |
| en.read_flowset | Reads a flowset and converts to a list with 1) a big... |
| en.write_flowset | Wrapper to flowCore:::write.flowSet to preserve channel... |
| fastBreaks | Computes breaks for a color scale based on a matrix |
| filter_fcs | Use regular expressions to only filter files ending in .fcs... |
| freqplot | Plot a 2D heatmap of frequencies using rectangular bins (a la... |
| gate_from_biplot | From a biplot let the user interactively draw polygons to... |
| generate_description | Generates description for a flowFrame |
| imageWrapper | Wrapper to image where the coordinate system is more... |
| line2user | Convert line to user coordinates |
| makeTransparent | Makes a color transparent |
| matrix_to_flowframe | A wrapper to flowFrame constructor that also updates the... |
| namefile_to_colnames | Takes from input a channelsname.csv file and returns columns... |
| polygon.clean | Remove self intersection in polygons |
| prior_free_bayes | Bayes classifier - training |
| prior_free_bayes_call | Bayes classifier - prediction |
| split_matrix | Fast splitting of matrix to list (avoids conversion do... |
| toColors_2d | 2D to color map |
| toColors_continuous | Map a vector to colors (for continuous variables); new... |
| toColors_continuous_fromRank | Map a vector to colors (for continuous variables); old... |
| toColors_discrete | Map a vector to colors (for categorical variables) |
| tsGates | faust:::tsGates wrapper |
| update_gate | Updates a gate vector |
| writeClipboard | writeClipboard for Linux |
