Files in eckartbindewald/bfxapps2
R Bioinformatics Applications
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/mockgenome.R
R/randomfragment.R
bfxapps2.Rproj
data-raw/Liver_data.csv
data-raw/corona/raw/6LU7_A.fasta.txt
data-raw/corona/raw/README.md
data-raw/corona/raw/cov2_protease.fa
data-raw/corona/raw/cov_main_protease_incomplete.fasta
data-raw/corona/raw/mainprotease_betacov.fasta
data-raw/corona/raw/mainprotease_hcov.fa
data-raw/corona/raw/mainprotease_ibv.fa
data-raw/corona/raw/mainprotease_mhv.fa
data-raw/corona/raw/mainprotease_sarscov.fa
data-raw/corona/raw/mainprotease_tgev.fa
data-raw/corona/raw/run.sh
data-raw/dm3_gravity/#dm3_grav_design2.csv#
data-raw/dm3_gravity/dm3_grav_counts.csv
data-raw/dm3_gravity/dm3_grav_counts2.csv
data-raw/dm3_gravity/dm3_grav_design.csv
data-raw/dm3_gravity/dm3_grav_design2.csv
data-raw/mockgenome/mockgenome.R
data/rnaseq_mock.rda
data/singlevariant.rda
inst/extdata/coronaviridae/GCF_009858895.2_ASM985889v3_genomic.gff
inst/extdata/coronaviridae/README.md
inst/extdata/coronaviridae/commoncold_229e.fasta
inst/extdata/coronaviridae/commoncold_nl63.fasta
inst/extdata/coronaviridae/commoncold_oc43.fasta
inst/extdata/coronaviridae/coronaviridae.fasta
inst/extdata/coronaviridae/mers.fasta
inst/extdata/coronaviridae/old/sars_cov2.fasta
inst/extdata/coronaviridae/sars.fasta
inst/extdata/coronaviridae/sars_cov2.fasta
inst/extdata/variants/singlevariant.csv
tests/testthat.R
tests/testthat/test-genome_mock.R
tests/testthat/test-random_fragments.R
tests/testthat/test-random_sequence.R
vignettes/.Rcache/0070bf2636d8f186c67448fb530b872d.Rcache
vignettes/.gitignore
vignettes/alignmentviz.Rmd
vignettes/analyze_a_single_variant.Rmd
vignettes/automl.Rmd
vignettes/batcheffects.Rmd
vignettes/bfx553_homework1.Rmd
vignettes/bio3d.Rmd
vignettes/ch01_rnaseq.Rmd
vignettes/copynumbervariation.Rmd
vignettes/corona_alignment.Rmd
vignettes/demo_stringmatch.Rmd
vignettes/genes.gff
vignettes/gwas.Rmd
vignettes/gwas2.Rmd
vignettes/gwas_excercise.Rmd
vignettes/metagenomics1.Rmd
vignettes/metagenomics2.Rmd
vignettes/metagenomics4.Rmd
vignettes/metagenomics5.Rmd
vignettes/ml_randomforest.Rmd
vignettes/mockgenome.Rmd
vignettes/multipletesting.Rmd
vignettes/poisson.Rmd
vignettes/poweranalysis.Rmd
vignettes/preliminaries.Rmd
vignettes/proteomics.Rmd
vignettes/proteomics1.Rmd
vignettes/proteomics2.Rmd
vignettes/proteomics3.Rmd
vignettes/rnaseq/Screen Shot 2020-01-28 at 4.29.34 PM.png
vignettes/rnaseq/Screen Shot 2020-01-28 at 5.22.51 PM.png
vignettes/rnaseq/Screen Shot 2020-01-28 at 5.56.38 PM.png
vignettes/rnaseq/Screen Shot 2020-01-28 at 5.58.00 PM.png
vignettes/rnaseq/Screen Shot 2020-01-30 at 12.46.10 PM.png
vignettes/rnaseq/fdr.png
vignettes/rnaseq/pvalue.png
vignettes/rnaseq_deseq2.Rmd
vignettes/rnaseq_deseq2b.Rmd
vignettes/rnaseq_new_genes.Rmd
vignettes/rnaseq_peaks.Rmd
vignettes/seqcat_slides.Rmd
vignettes/sequencealignments.Rmd
vignettes/sequencealignments2.Rmd
vignettes/sequencealignments3.Rmd
vignettes/singlevariant.Rmd
vignettes/translation.Rmd
vignettes/tree_basics.Rmd
vignettes/tree_differences.Rmd
vignettes/tree_from_alignment.Rmd
vignettes/tree_labels.Rmd
vignettes/tree_subtree.Rmd
vignettes/tree_visualization.Rmd
vignettes/treeviz.Rmd
vignettes/variantanalysis.Rmd
vignettes/variantanalysis2.Rmd
