Files in eco-hydro/phenofit
Extract Remote Sensing Vegetation Phenology

.Rbuildignore
.covrignore
.github/.gitignore
.github/CNAME
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
.gitmodules
.vscode/launch.json
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/D.R R/I_optim.R R/PhenoDeriv.R R/PhenoGu.R R/PhenoKl.R R/PhenoTrs.R R/RcppExports.R R/S3_fFITs.R R/add_HeadTail.R R/check_input.R R/coefficients.R R/curvefit.R R/curvefits.R R/curvefits_LocalModel.R R/deprecated/backval.R R/deprecated/doubleLogistics_fitting.R R/deprecated/ex-optim_pheno_julia.R R/deprecated/v_point.R R/deprecated_season.R R/derivs.R R/doubleLogistics-init_param.R R/doubleLogistics_R.R R/doubleLogistics_cpp.R R/doubleLogistics_fitting.R R/examples/ex-D1.R R/examples/ex-FitDL.R R/examples/ex-I_optim.R R/examples/ex-PhenoTrs.R R/examples/ex-check_input.R R/examples/ex-curvefits_LocalModel.R R/examples/ex-f_goal.R R/examples/ex-nlminb_julia.R R/examples/ex-opt_FUN.R R/examples/ex-optim_pheno.R R/examples/ex-season.R R/examples/ex-season_mov.R R/f_goal.R R/findpeaks.R R/get_GOF.R R/get_fitting.R R/get_param.R R/get_pheno.R R/global_data.R R/global_options.R R/global_vars.R R/init_lambda.R R/julia/findpeaks_season_jl.R R/julia/julia.R R/julia/opt_nlminb_julia.R R/julia/whit_lambda_optim.R R/make_legend.R R/opt_FUN.R R/opt_nlminb.R R/optim_pheno.R R/phenofit-package.R R/plot_curvefits.R R/plot_input.R R/plot_phenofit.R R/plot_season.R R/process_phenofit.R R/process_season.R R/qcFUN.R R/roughFit.R R/season_input.R R/season_mov.R R/season_tools.R R/smooth_wHANTS.R R/smooth_wSG.R R/smooth_wWHIT.R R/smooth_wWHIT_lambda.R R/temp/check_seasonality.R R/temp/curvefits2.R R/temp/curvefits_optimx.R R/temp/hess.R R/temp/whit_class_deprecated.R R/tidy_MODIS.R R/tools.R R/tools_plyr.R R/wFUN.R README.Rmd README.md _build.R
_pkgdown.yml
data-raw/DATASET.R data-raw/dat_CA-NS6.R
data/CA_NS6.rda
data/MOD13A1.rda
data/input_single.rda
inst/docker.md inst/examples/ex-curvefit.R inst/examples/ex-curvefits.R inst/examples/ex-get_fitting_param_GOF.R inst/examples/ex-visual.R inst/examples/phenofit_MOD13A1.R man/CA_NS6.Rd man/D.Rd
man/Figure/Extract phenology-1.svg
man/Figure/Figure1_phenofit_flowchart.svg
man/Figure/curve fitting-1.svg
man/Figure/divide growing season-1.svg
man/FitDL.Rd man/GOF.Rd man/I_optim.Rd man/MOD13A1.Rd man/PhenoDeriv.Rd man/PhenoGu.Rd man/PhenoKl.Rd man/PhenoTrs.Rd man/R2_sign.Rd man/add_HeadTail.Rd man/brks2rfit.Rd man/check_GS_HeadTail.Rd man/check_input.Rd man/check_ylu.Rd man/curvefit.Rd man/curvefit0.Rd man/curvefits.Rd man/curvefits_LocalModel.Rd man/cutoff.Rd man/cv_coef.Rd man/fFIT.Rd man/fFITs.Rd man/f_goal.Rd man/f_goal2.Rd man/find_season.peaks.Rd man/findpeaks.Rd man/getRealDate.Rd man/get_GOF.Rd man/get_fitting.Rd man/get_param.Rd man/get_pheno.Rd man/init_lambda.Rd man/init_param.Rd man/input_single.Rd man/kurtosis.Rd man/lambda_vcurve.Rd man/logistic.Rd man/logistics.Rd man/melt_list.Rd man/movmean.Rd man/opt_FUN.Rd man/optim_pheno.Rd man/phenofit.Rd man/plot_curvefits.Rd man/plot_input.Rd man/plot_phenofit.Rd man/plot_season.Rd man/process_phenofit.Rd man/process_season.Rd man/qcFUN.Rd man/qc_levels.Rd man/qc_sentinel2.Rd man/rcpp_season_filter.Rd man/rcpp_wSG.Rd man/reexports.Rd man/removeClosedExtreme.Rd man/roughFit.Rd man/season.Rd man/season_input.Rd man/season_mov.Rd man/set_options.Rd man/smooth_wHANTS.Rd man/smooth_wSG.Rd man/smooth_wWHIT.Rd man/tidy_MOD13.Rd man/tidy_pheno.Rd man/v_curve.Rd man/wFUN.Rd man/whit2.Rd
phenofit.Rproj
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/doubleLogistics.cpp
src/f_goal.cpp
src/register_routines.c
src/season_filter.cpp
src/smooth_wSG.cpp
src/smooth_whit.c
src/wTSM.cpp
tests/testthat.R tests/testthat/helper_MOD13A1.R tests/testthat/test-AnalyticalDerivs.R tests/testthat/test-GOF.R tests/testthat/test-PhenoExtract.R tests/testthat/test-coefficients.R tests/testthat/test-curvefit.R tests/testthat/test-curvefits.R tests/testthat/test-curvefits_LocalModel.R tests/testthat/test-fFITs.R tests/testthat/test-find_season.R tests/testthat/test-findpeaks.R tests/testthat/test-melt_list.R tests/testthat/test-movmean.R tests/testthat/test-optim.R tests/testthat/test-qcFUN.R tests/testthat/test-reorder_name.R tests/testthat/test-season.R tests/testthat/test-season_input.R tests/testthat/test-season_mov.R tests/testthat/test-set_options.R tests/testthat/test-v_curve.R tests/testthat/test-wSG.R
vignettes/.gitignore
vignettes/phenofit-procedures.Rmd vignettes/phenofit_CA-NS6.Rmd
eco-hydro/phenofit documentation built on Feb. 8, 2025, 4:22 p.m.