API for effiken/scDissector
Exploratory Data Analysis tool for single-cell RNA-seq data
| Global functions | |
|---|---|
| MAP | Source code |
| adjust_gene_names | Source code |
| adt_list_to_matrix | Source code |
| aggregate_sparse | Source code |
| cap | Source code |
| create_clustering_data_dir | Source code |
| downsample | Source code |
| example | Source code |
| fisher.r2z | Source code |
| gene_cor_analysis | Source code |
| getLikelihood | Source code |
| getOneBatchCorrectedLikelihood | Source code |
| get_avg_gene_to_gene_cor | Source code |
| get_avg_module_to_gene_cor | Source code |
| get_cell_counts | Source code |
| get_cluster_set_tree | Source code |
| get_expected_noise_UMI_counts_alpha | Source code |
| get_expected_noise_UMI_counts_beta | Source code |
| get_freqs | Source code |
| get_gene_cormap | Source code |
| get_gene_symbol_conveters | Source code |
| get_one_likelihood | Source code |
| get_total_likelihood | Source code |
| import_dataset_and_model | Man page Source code |
| insilico_sorter | Source code |
| load_dataset_and_model | Man page Source code |
| load_gene_symbol_converters | Source code |
| load_metacell_clustering | Source code |
| load_scDissector_data | Man page Source code |
| load_seurat_rds | Source code |
| merge_dataset_and_models | Source code |
| noiseEMsingleBatch | Source code |
| normalize_by_clusterset_frequency | Source code |
| parse_modules | Source code |
| plot_avg_heatmap | Source code |
| plot_avg_heatmap_interactive | Source code |
| plot_subtype_freqs | Source code |
| plot_truth_heatmap | Source code |
| run_scDissector | Man page Source code |
| save_gene_cor_map | Source code |
| transform_models | Source code |
| update_alpha_single_batch | Source code |
| update_beta_single_batch | Source code |
| update_models | Source code |
| update_models_debatched | Source code |
