Man pages for eliotmiller/shiftPlot
Phylogenetic shift plotting
| dropManyTips | Drop all tips but one per named clade |
| equivCut | Drop duplicated matched nodes |
| firstBranches | Drop all tips but one per named clade |
| getCoords | Get coordinates for plotting tree |
| identifyShifts | Identify shift points along the phylogeny in trait state |
| idMatches | Identify matched nodes between two trees |
| optimalCollapse | Determine which clades can be collapsed |
| phy | A phylogeny in ape format. |
| polytomyBind | Drop all tips but one per named clade |
| Precur_res.corHMM | corHMM output. |
| processMaps | Process phytools simmaps |
| tableSetup | Set up a table for node-matching |
| tipFlip | Flip tips to have the states of their parent nodes |
| trianglePlotter | Plot a phylogeny with triangles representing clades |
| understandNode | Investigate a node |
