| aij.theta | Closeness or Proximity Matrix for Tango's Spatial Clustering... |
| asycovTkTl | Asymptotic Covariance between T_k and T_l Values |
| asyvarTk | Asymptotic Variance of Cuzick and Edwards T_k Test statistic |
| bvnorm.pdf | pdf of the Bivariate Normal Distribution |
| cellsTij | Entries for the Types I-IV cell-specific tests |
| ceTk | Cuzick and Edwards T_k Test statistic |
| ceTkinv | Cuzick and Edwards T_k^{inv} Test statistic |
| ceTrun | Cuzick and Edwards T_{run} Test statistic |
| cov.nnct | Covariance Matrix of the Cell Counts in an NNCT |
| cov.nnsym | Covariance Matrix of the Differences of the Off-Diagonal Cell... |
| covNrow2col | Conversion of the Covariance Matrix of the Row-wise... |
| cov.seg.coeff | Covariance Matrix of Segregation Coefficients in a... |
| covTcomb | Covariance matrix for T_k values in 'Tcomb' |
| cov.tct | Covariance Matrix of the Entries of the Type I-IV TCTs |
| covTkTl | Finite Sample Covariance between T_k and T_l Values |
| dist2full | Converts a lower triangular distance matrix to a full... |
| dist.std.data | Interpoint Distance Matrix for Standardized Data |
| dot-onAttach | .onAttach start message |
| dot-onLoad | .onLoad getOption package settings |
| euc.dist | The Euclidean distance between two vectors, matrices, or data... |
| EV.Nii | Expected Values of the Self Entries in a Species... |
| EV.nnct | Expected Values of the Cell Counts in NNCT |
| EV.rct | Expected Values of the Cell Counts in RCT |
| EV.Tcomb | Expected Value for Cuzick & Edwards T_{comb} Test Statistic |
| EV.tct | Expected Values of the Types I-IV cell-specific tests |
| EV.tctI | Expected Values of the Type I cell-specific tests |
| EV.Tkinv | Expected Value of Cuzick and Edwards T_k^{inv} Test statistic |
| exact.nnct | Exact version of Pearson's chi-square test on NNCTs |
| exact.pval1s | p-value correction to the one-sided version of exact NNCT... |
| exact.pval2s | p-value correction to the two-sided version of exact NNCT... |
| funsAijmat | Aij matrices for computation of Moments of Cuzick and Edwards... |
| funs.auxcovtct | Auxiliary Functions for Computing Covariances Between Cell... |
| funs.base.class.spec | Base Class-specific Chi-square Tests based on NNCTs |
| funs.cell.spec.ss | Pielou's Cell-specific Segregation Test with Normal... |
| funs.class.spec | Class-specific Chi-square Tests based on NNCTs |
| funsC_MI_II | Correction Matrices for the Covariance Matrix of NNCT entries |
| funs.covNii | Covariance Matrix of the Self Entries in a Species... |
| funs.covtct | Functions for Covariances of the Entries of the Types I, III... |
| funsExpTk | Expected Value for Cuzick and Edwards T_k Test statistic |
| funsExpTrun | Expected Value for Cuzick and Edwards T_{run} Test statistic |
| funs.kNNdist | Functions for the k^{th} and 'k' NN distances |
| funs.kNNdist2cl | Functions for the k^{th} and 'k' NN distances |
| funsN_I_II | Correction Matrices for the NNCT entries |
| funsNNclass.spec | NN Class-specific Chi-square Tests based on NNCTs |
| funsOnevsRest | Functions for one versus rest type labeling |
| funs.overall.nnct | Dixon's Overall Test of Segregation for NNCT |
| funs.overall.seg | Overall Segregation Tests for NNCTs |
| funs.overall.tct | Types I-IV Overall Tests of Segregation for NNCT |
| funs.pijPij | The functions for probability of selecting a number of points... |
| funsPseg.ss | Pielou's Overall Test of Segregation for NNCT (for Sparse... |
| funsQandR | Functions for the Number of Shared NNs, Shared NN vector and... |
| funsRowColSums | Functions for row and column sums of a matrix |
| funs.scct | Species Correspondence Contingency Table (SCCT) |
| funs.seg.coeff | Pielou's Segregation Coefficients for NNCTs |
| funs.varNii | Variances of the Self Entries in a Species Correspondence... |
| funs.vartct | Functions for Variances of Cell Counts in the Types I, III... |
| funsVarTk | Variance of Cuzick and Edwards T_k Test statistic |
| funsVarTrun | Variance of Cuzick and Edwards T_{run} Test statistic |
| funsW345values | W_k values for Tango's T test statistic |
| funsXsq.nnref | Reflexivity Test with Chi-square Approximation |
| funsXsq.nnsym.dx | Dixon's NN Symmetry Test with Chi-square Approximation for... |
| funsXsq.nnsym.ss | Pielou's First Type of NN Symmetry Test with Chi-square... |
| funsXsq.seg.coeff | Chi-square Test for Segregation Coefficients |
| funsXsq.spec.cor | Overall Species Correspondence Test with Chi-square... |
| funsZcell.nnct | Dixon's Cell-specific Z Tests of Segregation for NNCT |
| funsZcell.nnct.pval | p-values for Cell-specific Z Test Statistics for NNCT |
| funsZcell.spec | Cell-specific Z Tests of Segregation for NNCTs |
| funsZcell.tct | Types I-IV Cell-specific Z Tests of Segregation based on... |
| funsZdir.nnct | Directional Segregation Test for Two Classes with Normal... |
| funsZdir.nnct.ss | Directional Segregation Test for Two Classes with Normal... |
| funsZmixed.nonref | Mixed-Non-Reflexivity Test with Normal Approximation |
| funsZnnref | Z Tests for NN Reflexivity |
| funsZnnself | Self-Reflexivity Tests with Normal Approximation |
| funsZnnself.sum | Cumulative Species Correspondence Test with Normal... |
| funsZnnsym2cl.dx | Dixon's NN Symmetry Test with Normal Approximation for Two... |
| funsZnnsym2cl.ss | Pielou's First Type of NN Symmetry Test with Normal... |
| funsZnnsym.dx | Dixon's Pairwise NN Symmetry Test with Normal Approximation |
| funsZnnsym.ss | Pielou's Pairwise NN Symmetry Test with Normal Approximation... |
| funsZseg.coeff | Z Tests for Segregation Coefficients |
| funsZsegind | Z Tests for Segregation Indices |
| funsZself.ref | Self-Reflexivity Test with Normal Approximation |
| funsZTkinv | Z-Test for Cuzick and Edwards T_k^{inv} statistic |
| ind.nnsym | Index Matrix for Computing the Covariance of Dixon's Overall... |
| ind.seg.coeff | Index Matrix for Computing the Covariance of Segregation... |
| ipd.mat | Interpoint Distance Matrix |
| ipd.mat.euc | Euclidean Interpoint Distance Matrix |
| kNN | Finding the indices of the 'k' NNs of a given point |
| mat2vec | Conversion of a Matrix to a Vector |
| matrix.sqrt | Square root of a matrix |
| Ninv | Vector of Shared NNs and Number of Reflexive NNs |
| NN | Finding the index of the NN of a given point |
| nnct | Nearest Neighbor Contingency Table (NNCT) |
| nnct.boot.dis | Bootstrap Nearest Neighbor Contingency Table (NNCT) |
| nnct.sub | Nearest Neighbor Contingency Table (NNCT) with (only) base... |
| NNdist | Distances between subjects and their NNs |
| NNdist2cl | Distances between subjects from class i and their NNs from... |
| nnspat | nnspat: A package for NN Methods and Their Use in Testing... |
| NNsub | Finding the index of the NN of a given point among a subset... |
| Nt.def | N_t Value (found with the definition formula) |
| Ntkl | N_{tkl} Value |
| pairwise.lab | Keeping the pair of the specified labels in the data |
| pick.min.max | Smallest and Largest Distances in a Distance Matrix |
| pk | Probability of 'k' items selected from the class with size... |
| plot.Clusters | Plot a 'Clusters' object |
| plot.SpatPatterns | Plot a 'SpatPatterns' object |
| print.cellhtest | Print a summary of a 'cellhtest' object |
| print.Chisqtest | Print a summary of a 'Chisqtest' object |
| print.classhtest | Print a summary of a 'classhtest' object |
| print.Clusters | Print a 'Clusters' object |
| print.refhtest | Print a summary of a 'refhtest' object |
| print.SpatPatterns | Print a 'SpatPatterns' object |
| print.summary.Clusters | Print a summary of a 'Clusters' object |
| print.summary.SpatPatterns | Print a summary of a 'SpatPatterns' object |
| prob.nnct | Probability of the current nearest neighbor contingency table |
| QRval | Number of Shared and Reflexive NNs |
| Qsym.ct | Q-symmetry Contingency Table (QCT) |
| Qsym.test | Pielou's Second Type of NN Symmetry Test with Chi-square... |
| rassoc | Generation of Points Associated with a Given Set of Points |
| rassocC | Generation of Points Associated in the Type C Sense with a... |
| rassocG | Generation of Points Associated in the Type G Sense with a... |
| rassocI | Generation of Points Associated in the Type I Sense with a... |
| rassocU | Generation of Points Associated in the Type U Sense with a... |
| rct | Reflexivity Contingency Table (RCT) |
| rdiag.clust | Generation of Points with Clusters along the First Diagonal |
| rhor.clust | Generation of Points with Clusters along the Horizontal Axis |
| rnonRL | Non-Random Labeling of a Given Set of Points |
| rnonRLI | Type I Non-Random Labeling of a Given Set of Points |
| rnonRLII | Type II Non-Random Labeling of a Given Set of Points |
| rnonRLIII | Type III Non-Random Labeling of a Given Set of Points |
| rnonRLIV | Type IV Non-Random Labeling of a Given Set of Points |
| rrot.clust | Generation of Points with Rotational Clusters |
| rseg | Generation of Points under Segregation of Two Classes |
| rself.ref | Generation of Points from Self Correspondence Pattern |
| runif.circ | Generation of Uniform Points in a Circle |
| seg.ind | Dixon's Segregation Indices for NNCTs |
| sharedNNmc | The Shared NN Vectors for Multiple Classes |
| SkewTk | Skewness of Cuzick and Edwards T_k Test statistic |
| summary.Clusters | Return a summary of a 'Clusters' object |
| summary.SpatPatterns | Return a summary of a 'SpatPatterns' object |
| swamptrees | Tree Species in a Swamp Forest |
| Tcomb | Cuzick & Edwards Tcomb Test Statistic |
| tct | T Contingency Table (TCT) |
| tocher.cor | Tocher's randomized correction to the exact p-value |
| Tval | T value in NN structure |
| var.nnct | Variances of Cell Counts in an NNCT |
| var.nnsym | Variances of Differences of Off-Diagonal Entries in an NNCT |
| varPseg.coeff | Variance of Pielou's Segregation Coefficient for 2 Classes |
| var.seg.coeff | Variances of Segregation Coefficients in a Multi-class Case |
| var.tct | Variances of Entries in a TCT |
| varTkinv.sim | Simulated Variance of Cuzick and Edwards T_k^{inv} Test... |
| Wmat | The incidence matrix 'W' for the NN digraph |
| Xsq.ceTk | Chi-square Approximation to Cuzick and Edwards T_k Test... |
| Xsq.nnsym | Overall NN Symmetry Test with Chi-square Approximation |
| ZceTk | Z-test for Cuzick and Edwards T_k statistic |
| Znnsym | NN Symmetry Test with Normal Approximation |
| Znnsym2cl | NN Symmetry Test with Normal Approximation for Two Classes |
| ZTcomb | Z-test for Cuzick and Edwards T_{comb} statistic |
| ZTrun | Z-test for Cuzick and Edwards T_{run} statistic |
