emanuelmfonseca/P2C2M.GMYC: Model violations under the Generalized Mixed Yule Coalescent (GMYC)

P2C2M.GMYC was designed to assess the statistical fit of the GMYC model to a user-supplied data set consisting of DNA sequence data from some number of samples representing an unknown number of species. The package implements two strategies for assessing the statistical fit of empirical data to the GMYC model: a parametric bootstrap for the likelihood framework and a posterior predictive simulation (PPS) for the Bayesian framework.

Getting started

Package details

AuthorEmanuel M. Fonseca, Drew J. Duckett, Bryan C. Carstens
MaintainerEmanuel M. Fonseca <emanuelmfonseca@gmail.com>
LicenseGPL-2
Version1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("emanuelmfonseca/P2C2M.GMYC")
emanuelmfonseca/P2C2M.GMYC documentation built on Aug. 30, 2020, 5:20 a.m.