.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
NeuroDecodeR.Rproj
R/NeuroDecodeR.R
R/cl_max_correlation.R
R/cl_poisson_naive_bayes.R
R/cl_svm.R
R/create_binned_data.R
R/cv_standard.R
R/ds_basic.R
R/ds_generalization.R
R/fp_select_k_features.R
R/fp_zscore.R
R/generic_functions.R
R/get_num_label_repetitions.R
R/log_and_save_decoding_results.R
R/ndr_container.R
R/private_helper_functions.R
R/raster_data_functions.R
R/rm_confusion_matrix.R
R/rm_main_results.R
R/test_valid_NDR_objects.R
README.Rmd
README.md
_pkgdown.yml
appveyor.yml
cran-comments.md
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inst/extdata/Zhang_Desimone_7object_raster_data_small_mat/bp1001spk_02A_raster_data.mat
inst/extdata/Zhang_Desimone_7object_raster_data_small_mat/bp1001spk_03A_raster_data.mat
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inst/extdata/Zhang_Desimone_7object_raster_data_small_rds/bp1001spk_04A_raster_data.rds
man/NeuroDecodeR.Rd
man/aggregate_CV_split_results.Rd
man/aggregate_CV_split_results.rm_confusion_matrix.Rd
man/aggregate_CV_split_results.rm_main_results.Rd
man/aggregate_resample_run_results.Rd
man/aggregate_resample_run_results.rm_confusion_matrix.Rd
man/aggregate_resample_run_results.rm_main_results.Rd
man/cl_max_correlation.Rd
man/cl_poisson_naive_bayes.Rd
man/cl_svm.Rd
man/convert_matlab_raster_data.Rd
man/create_binned_data.Rd
man/cv_standard.Rd
man/ds_basic.Rd
man/ds_generalization.Rd
man/figures/README-TCD_plot-1.png
man/figures/README-line_plot-1.png
man/figures/README-pipe_example-1.png
man/fp_select_k_features.Rd
man/fp_zscore.Rd
man/get_data.Rd
man/get_data.ds_basic.Rd
man/get_data.ds_generalization.Rd
man/get_num_label_repetitions.Rd
man/get_num_label_repetitions_each_site.Rd
man/get_parameters.Rd
man/get_parameters.cl_max_correlation.Rd
man/get_parameters.cl_poisson_naive_bayes.Rd
man/get_parameters.cl_svm.Rd
man/get_parameters.cv_standard.Rd
man/get_parameters.ds_basic.Rd
man/get_parameters.ds_generalization.Rd
man/get_parameters.fp_select_k_features.Rd
man/get_parameters.fp_zscore.Rd
man/get_parameters.rm_confusion_matrix.Rd
man/get_parameters.rm_main_results.Rd
man/get_predictions.Rd
man/get_predictions.cl_max_correlation.Rd
man/get_predictions.cl_poisson_naive_bayes.Rd
man/get_predictions.cl_svm.Rd
man/get_siteIDs_with_k_label_repetitions.Rd
man/log_check_results_already_exist.Rd
man/log_load_results_from_params.Rd
man/log_load_results_from_result_name.Rd
man/log_save_results.Rd
man/plot.label_repetition.Rd
man/plot.raster_data.Rd
man/plot.rm_confusion_matrix.Rd
man/plot.rm_main_results.Rd
man/plot_main_results.Rd
man/preprocess_data.Rd
man/preprocess_data.fp_select_k_features.Rd
man/preprocess_data.fp_zscore.Rd
man/read_matlab_raster_data.Rd
man/read_raster_data.Rd
man/rm_confusion_matrix.Rd
man/rm_main_results.Rd
man/run_decoding.Rd
man/run_decoding.cv_standard.Rd
man/test_valid_binned_format.Rd
man/test_valid_ndr_object.Rd
man/test_valid_raster_format.Rd
revdep/.gitignore
revdep/README.md
revdep/cran.md
revdep/failures.md
revdep/problems.md
tests/testthat.R
tests/testthat/cv_results_example.Rda
tests/testthat/example_DECODING_RESULTS.Rda
tests/testthat/example_ZD_train_and_test_set.Rda
tests/testthat/fake_binned_data.Rda
tests/testthat/fake_simultaneous_binned_data.Rda
tests/testthat/generate_data_to_test_NDR.R
tests/testthat/test-bin_convert_data.R
tests/testthat/test-classifiers.R
tests/testthat/test-datasources.R
tests/testthat/test-feature_preprocessors.R
tests/testthat/test-full_decoding.R
tests/testthat/test-log_save_results.R
tests/testthat/test-ndr_container.R
tests/testthat/test-result_metrics.R
vignettes/NDR_object_specification.Rmd
vignettes/data_formats.Rmd
vignettes/datasets.Rmd
vignettes/generalization_tutorial.Rmd
vignettes/introduction_tutorial.Rmd