Man pages for emilio-berti/assembly
Simulate Community Assembly

adirondackAdjacency matrix of the Adirondack lakes
dot-basalsBasal species in the metaweb
dot-componentsNumber of connected components
dot-consumersConsumers in the metaweb
dot-find_isolatedFind isolated species
dot-find_replacementsFind replacement species
dot-get_adjGet food web adjacency matrix
dot-modulesNumber of modules of the food web
dot-moveOne move of the limiting similarity algorithm
dot-topTop consumer species in the metaweb
draw_random_speciesDraw random species from a meta-community
metropolis.hastingsMetropolis-Hastings algorithm
name_metawebName metaweb species
networkCompute network metrics
resource_filteringResource filtering assembly
show_fwPlot food web
show_graphPlot graph
similarity_filteringLimiting similarity filtering assembly
trophic_levelsCalculate trophic level
trophic_nicheTrophic niches
wJaccardCompute weighted Jaccard similarity
emilio-berti/assembly documentation built on Aug. 16, 2022, 9:50 p.m.