Man pages for emilio-berti/assembly
Simulate Community Assembly
| adirondack | Adjacency matrix of the Adirondack lakes |
| dot-basals | Basal species in the metaweb |
| dot-components | Number of connected components |
| dot-consumers | Consumers in the metaweb |
| dot-find_isolated | Find isolated species |
| dot-find_replacements | Find replacement species |
| dot-get_adj | Get food web adjacency matrix |
| dot-modules | Number of modules of the food web |
| dot-move | One move of the limiting similarity algorithm |
| dot-top | Top consumer species in the metaweb |
| draw_random_species | Draw random species from a meta-community |
| metropolis.hastings | Metropolis-Hastings algorithm |
| name_metaweb | Name metaweb species |
| network | Compute network metrics |
| resource_filtering | Resource filtering assembly |
| show_fw | Plot food web |
| show_graph | Plot graph |
| similarity_filtering | Limiting similarity filtering assembly |
| trophic_levels | Calculate trophic level |
| trophic_niche | Trophic niches |
| wJaccard | Compute weighted Jaccard similarity |
