Man pages for eolagbaju/ODER
Optimising the Definition of Expressed Regions
| add_expressed_genes | Adding the nearest expressed genes |
| annotatERs | Connects ERs to genes using junction data, then classifies... |
| file_cache | Cache a file if it is not found locally |
| get_chr_info | Get information from UCSC about the chromosomes passed in |
| get_count_matrix | Generate the count matrix |
| get_coverage | Obtain the mean coverage across multiple BigWig files |
| get_ers | Define sets of ERs |
| get_opt_ers | Obtain set of non-overlapping exons |
| gtex_SRP012682_SRX222703_lung_auc_1 | An example AUC value |
| gtex_SRP012682_SRX222703_lung_coverage_1 | An example object containing coverage |
| gtex_SRP012682_SRX222703_lung_erdelta_1 | An example set of ER deltas |
| gtex_SRP012682_SRX222703_lung_ers_1 | An example set of Expressed Regions |
| lung_junc_21_22 | Junction data of chromosomes 21 and 22 from a lung tissue... |
| ODER | ODER: Optimising the Definition of Expressed Regions |
| plot_ers | Plot Expressed regions |
| pseudogene | Different transcript biotypes that count as pseudogene |
| refine_ERs | Refines the ERs start and end points |
| tissue_options | The different tissues that can be filtered on for gene... |
