Man pages for epiforecasts/covid19.slovakia.mass.testing
Code accompanying the manuscript "The effectiveness of population-wide screening in reducing SARS-CoV-2 infection prevalence in Slovakia"
| bed_occupancy | Plot bed occupancy in Slovakia |
| county_table | Produce a table of prevalence ratios in counties |
| covariates | Covariates |
| estimate_min_specificity | Estimate minimum specificity of the antigen test used for... |
| make_labels | Helper function for lables in plot |
| mobility | Plot mobility data for Slovakia |
| mob.slo | Mobility index for Slovakia as measured by Google |
| ms.tst | Mass testing data |
| PCR.inc | PCR.inc |
| pcr_incidence | Plot PCR positive incidence and mass testing timings for... |
| plot_predicted_prevalence | Plot infection prevalence as predicted by EpiNow2 |
| prevalence | Plot prevalence with confidence intervals as measured in... |
| prevalence.samples | Prevalence samples |
| regression | Regression analysis of prevalence |
| risk_ratios | Calculate risk ratios for mass testing in Slovakia |
| Rt.county | Rt.county |
| self_adjusted_risk_ratios | Self-adjusted risk ratios |
| simplify_names | Sipmlify county names |
| slovakia_shape | Shapes |
