Files in epiforecasts/covidregionaldata
Subnational Data for COVID-19 Epidemiology
.Rbuildignore
.covrignore
.devcontainer/Dockerfile
.devcontainer/devcontainer.json
.devcontainer/library-scripts/common-debian.sh
.github/.gitignore
.github/workflows/Belgium.yaml
.github/workflows/Brazil.yaml
.github/workflows/Canada.yaml
.github/workflows/Colombia.yaml
.github/workflows/Covid19DataHub.yaml
.github/workflows/Cuba.yaml
.github/workflows/ECDC.yaml
.github/workflows/Estonia.yaml
.github/workflows/France.yaml
.github/workflows/Germany.yaml
.github/workflows/Google.yaml
.github/workflows/India.yaml
.github/workflows/Italy.yaml
.github/workflows/JHU.yaml
.github/workflows/JRC.yaml
.github/workflows/Lithuania.yaml
.github/workflows/Mexico.yaml
.github/workflows/Netherlands.yaml
.github/workflows/R-CMD-check.yaml
.github/workflows/SouthAfrica.yaml
.github/workflows/Switzerland.yaml
.github/workflows/UK.yaml
.github/workflows/USA.yaml
.github/workflows/WHO.yaml
.github/workflows/build-image.yaml
.github/workflows/greetings.yml
.github/workflows/lint.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-checklist.yaml
.github/workflows/source_actions_exist.yaml
.github/workflows/stale.yml
.github/workflows/test-coverage.yaml
.github/workflows/test-regional-datasets.yml
.gitignore
.lintr
.pre-commit-config.yaml
CODE_OF_CONDUCT.md
CRAN-SUBMISSION
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/Belgium.R
R/Brazil.R
R/Canada.R
R/Colombia.R
R/Covid19DataHub.R
R/Cuba.R
R/ECDC.R
R/Estonia.R
R/France.R
R/Germany.R
R/Google.R
R/India.R
R/Italy.R
R/JHU.R
R/JRC.R
R/Lithuania.R
R/Mexico.R
R/Netherlands.R
R/SouthAfrica.R
R/Switzerland.R
R/UK.R
R/USA.R
R/WHO.R
R/datasets.R
R/get_available_datasets.R
R/get_linelist.R
R/get_national_data.R
R/get_regional_data.R
R/processing.R
R/shared-methods.R
R/test-DataClass.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
covidregionaldata.Rproj
cran-comments.md
data-raw/colombia_codes.R
data-raw/france_codes.R
data-raw/jhu_codes.R
data-raw/lithuania_codes.R
data-raw/lithuania_codes.csv
data-raw/mexico_codes.R
data-raw/mexico_codes.csv
data-raw/render_available_datasets.R
data-raw/uk_codes.R
data-raw/vietnam_codes.R
data/JHU_codes.rda
data/all_country_data.rda
data/colombia_codes.rda
data/france_codes.rda
data/lithuania_codes.rda
data/mexico_codes.rda
data/uk_codes.rda
data/vietnam_codes.rda
inst/CITATION
inst/CountryTemplate.R
inst/WORDLIST
inst/examples/overview.R
inst/github_workflow_template.yaml
inst/make_hexsticker.R
inst/paper/paper.bib
inst/paper/paper.md
inst/test-github_workflow_present.R
man/Belgium.Rd
man/Brazil.Rd
man/Canada.Rd
man/Colombia.Rd
man/CountryDataClass.Rd
man/Covid19DataHub.Rd
man/Cuba.Rd
man/DataClass.Rd
man/ECDC.Rd
man/Estonia.Rd
man/France.Rd
man/Germany.Rd
man/Google.Rd
man/India.Rd
man/Italy.Rd
man/JHU.Rd
man/JHU_codes.Rd
man/JRC.Rd
man/Lithuania.Rd
man/Mexico.Rd
man/Netherlands.Rd
man/SouthAfrica.Rd
man/Switzerland.Rd
man/UK.Rd
man/USA.Rd
man/WHO.Rd
man/add_extra_na_cols.Rd
man/all_country_data.Rd
man/calculate_columns_from_existing_data.Rd
man/check_level.Rd
man/colombia_codes.Rd
man/complete_cumulative_columns.Rd
man/csv_reader.Rd
man/download_excel.Rd
man/expect_clean_cols.Rd
man/expect_columns_contain_data.Rd
man/expect_processed_cols.Rd
man/figures/README-g7_plot-1.png
man/figures/README-supported_region_plot-1.png
man/figures/README-uk_plot-1.png
man/figures/README-utla_plot-1.png
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-maturing.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/figures/logo.png
man/fill_empty_dates_with_na.Rd
man/france_codes.Rd
man/get_available_datasets.Rd
man/get_linelist.Rd
man/get_national_data.Rd
man/get_regional_data.Rd
man/glue_level.Rd
man/initialise_dataclass.Rd
man/json_reader.Rd
man/lithuania_codes.Rd
man/make_github_workflow.Rd
man/make_new_data_source.Rd
man/message_verbose.Rd
man/mexico_codes.Rd
man/process_internal.Rd
man/reexports.Rd
man/region_dispatch.Rd
man/reset_cache.Rd
man/return_data.Rd
man/roxygen/meta.R
man/run_default_processing_fns.Rd
man/run_optional_processing_fns.Rd
man/set_negative_values_to_zero.Rd
man/start_using_memoise.Rd
man/stop_using_memoise.Rd
man/test_cleaning.Rd
man/test_download.Rd
man/test_download_JSON.Rd
man/test_processing.Rd
man/test_return.Rd
man/totalise_data.Rd
man/uk_codes.Rd
man/vietnam_codes.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/custom_data/Belgium_level_1.rds
tests/testthat/custom_data/Belgium_level_2.rds
tests/testthat/custom_data/Brazil_level_1.rds
tests/testthat/custom_data/Brazil_level_2.rds
tests/testthat/custom_data/Canada_level_1.rds
tests/testthat/custom_data/Colombia_level_1.rds
tests/testthat/custom_data/Colombia_level_2.rds
tests/testthat/custom_data/Covid19DataHub_level_1.rds
tests/testthat/custom_data/Covid19DataHub_level_2.rds
tests/testthat/custom_data/Covid19DataHub_level_3.rds
tests/testthat/custom_data/Cuba_level_1.rds
tests/testthat/custom_data/ECDC_level_1.rds
tests/testthat/custom_data/Estonia_level_1.rds
tests/testthat/custom_data/France_level_1.rds
tests/testthat/custom_data/France_level_2.rds
tests/testthat/custom_data/Germany_level_1.rds
tests/testthat/custom_data/Germany_level_2.rds
tests/testthat/custom_data/Google_level_1.rds
tests/testthat/custom_data/Google_level_2.rds
tests/testthat/custom_data/Google_level_3.rds
tests/testthat/custom_data/India_level_1.rds
tests/testthat/custom_data/Italy_level_1.rds
tests/testthat/custom_data/JHU_level_1.rds
tests/testthat/custom_data/JHU_level_2.rds
tests/testthat/custom_data/JRC_level_1.rds
tests/testthat/custom_data/JRC_level_2.rds
tests/testthat/custom_data/Lithuania_level_1.rds
tests/testthat/custom_data/Lithuania_level_2.rds
tests/testthat/custom_data/Mexico_level_1.rds
tests/testthat/custom_data/Mexico_level_2.rds
tests/testthat/custom_data/Netherlands_level_1.rds
tests/testthat/custom_data/Netherlands_level_2.rds
tests/testthat/custom_data/SouthAfrica_level_1.rds
tests/testthat/custom_data/Switzerland_level_1.rds
tests/testthat/custom_data/UK_level_1.rds
tests/testthat/custom_data/UK_level_1_nhs.rds
tests/testthat/custom_data/UK_level_2.rds
tests/testthat/custom_data/USA_level_1.rds
tests/testthat/custom_data/USA_level_2.rds
tests/testthat/custom_data/Vietnam_level_1.rds
tests/testthat/custom_data/WHO_level_1.rds
tests/testthat/custom_data/ecdc.csv
tests/testthat/custom_data/ecdc.rds
tests/testthat/custom_data/generate_data.R
tests/testthat/custom_data/mexico_level_1_snap.rds
tests/testthat/custom_data/mexico_level_2_snap.rds
tests/testthat/custom_data/mtcars.csv
tests/testthat/custom_data/mtcars.json
tests/testthat/custom_data/who.rds
tests/testthat/custom_tests/expect_colname.R
tests/testthat/custom_tests/mock_data.R
tests/testthat/custom_tests/test-regional-dataset.R
tests/testthat/functions/dummy_class.R
tests/testthat/functions/test_initialise.R
tests/testthat/test-CountryDataClass.R
tests/testthat/test-DataClass.R
tests/testthat/test-check_country_class.R
tests/testthat/test-csv_reader.R
tests/testthat/test-get_available_datasets.R
tests/testthat/test-get_national_data.R
tests/testthat/test-get_regional_data.R
tests/testthat/test-initialise_dataclass.R
tests/testthat/test-json_reader.R
tests/testthat/test-message_verbose.R
tests/testthat/test-processing.R
tests/testthat/test-region_dispatch.R
tests/testthat/test-regional-datasets.R
vignettes/.gitignore
vignettes/quickstart.Rmd
vignettes/slowstart.Rmd
vignettes/supported-countries.Rmd
vignettes/testing.Rmd
