Files in epiforecasts/eval-germany-sp-nowcasting
Evaluating Semi-Parametric Nowcasts of COVID-19 Hospital Admissions in Germany
.Rbuildignore
.Rprofile
.devcontainer/Dockerfile
.devcontainer/devcontainer.json
.devcontainer/library-scripts/common-debian.sh
.github/.gitignore
.github/workflows/.gitignore
.github/workflows/build-and-publish-documentation.yaml
.github/workflows/build-and-push-image.yaml
.gitignore
.lintr
.pre-commit-config.yaml
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/evaluation.R
R/get-data.R
R/get-hub-forecasts.R
R/model-tools.R
R/models.R
R/plot.R
R/postprocess.R
R/targets-archive.R
R/utils.R
README.Rmd
README.md
_targets.R
_targets.Rmd
_targets.md
_targets_r/globals/globals.R
_targets_r/targets/age_groups.R
_targets_r/targets/age_nowcast.R
_targets_r/targets/age_week_nowcast.R
_targets_r/targets/combined_nowcasts.R
_targets_r/targets/complete_7day_hospitalisations.R
_targets_r/targets/complete_hospitalisations.R
_targets_r/targets/diagnostics.R
_targets_r/targets/dow_nowcast.R
_targets_r/targets/epinowcast_model.R
_targets_r/targets/epinowcast_settings.R
_targets_r/targets/fixed_nowcast.R
_targets_r/targets/hierarchical_submission_nowcast.R
_targets_r/targets/hospitalisation_url.R
_targets_r/targets/hospitalisations.R
_targets_r/targets/hospitalisations_by_date_report.R
_targets_r/targets/independent_nowcast.R
_targets_r/targets/independent_ref_dow_nowcast.R
_targets_r/targets/independent_submission_nowcast.R
_targets_r/targets/latest_7day_hospitalisations.R
_targets_r/targets/latest_hospitalisations.R
_targets_r/targets/locations.R
_targets_r/targets/max_report_delay.R
_targets_r/targets/nowcast_dates.R
_targets_r/targets/other_locations.R
_targets_r/targets/overall_only_nowcast.R
_targets_r/targets/prior_obs.R
_targets_r/targets/priors.R
_targets_r/targets/save-run-time.R
_targets_r/targets/save_7day_nowcasts.R
_targets_r/targets/save_daily_nowcasts.R
_targets_r/targets/save_diagnostics.R
_targets_r/targets/save_hierarchical_submission.R
_targets_r/targets/save_independent_submission.R
_targets_r/targets/save_latest_7day_hospitalisations.R
_targets_r/targets/save_latest_daily_hospitalisations.R
_targets_r/targets/score.R
_targets_r/targets/scored_nowcasts.R
_targets_r/targets/start_date.R
_targets_r/targets/summarised_7day_nowcast.R
_targets_r/targets/summarised_nowcast.R
_targets_r/targets/uninformed_priors.R
_targets_r/targets/week_nowcast.R
analyses/README.md
analyses/germany-example.R
analyses/synthetic-example.R
bin/README.md
bin/make-parallel-targets.sh
bin/make-targets.sh
bin/render-targets.sh
bin/update-git-remote.sh
bin/update-if-new-data.sh
bin/update-targets-and-publish.sh
bin/update-targets-remote.sh
bin/update-targets.sh
data/README.md
data/diagnostics/all.csv
data/diagnostics/fitting-failed.csv
data/diagnostics/high-divergent-transitions.csv
data/diagnostics/high-rhat.csv
data/diagnostics/run-times.csv
data/nowcasts/daily/2021-10-01.csv
data/nowcasts/daily/2021-10-02.csv
data/nowcasts/daily/2021-10-03.csv
data/nowcasts/daily/2021-10-04.csv
data/nowcasts/daily/2021-10-05.csv
data/nowcasts/daily/2021-10-06.csv
data/nowcasts/daily/2021-10-07.csv
data/nowcasts/daily/2021-10-08.csv
data/nowcasts/daily/2021-10-09.csv
data/nowcasts/daily/2021-10-10.csv
data/nowcasts/daily/2021-10-11.csv
data/nowcasts/daily/2021-10-12.csv
data/nowcasts/daily/2021-10-13.csv
data/nowcasts/daily/2021-10-14.csv
data/nowcasts/daily/2021-10-15.csv
data/nowcasts/daily/2021-10-16.csv
data/nowcasts/daily/2021-10-17.csv
data/nowcasts/daily/2021-10-18.csv
data/nowcasts/daily/2021-10-19.csv
data/nowcasts/daily/2021-10-20.csv
data/nowcasts/daily/2021-10-21.csv
data/nowcasts/daily/2021-10-22.csv
data/nowcasts/daily/2021-10-23.csv
data/nowcasts/daily/2021-10-24.csv
data/nowcasts/daily/2021-10-25.csv
data/nowcasts/daily/2021-10-26.csv
data/nowcasts/daily/2021-10-27.csv
data/nowcasts/daily/2021-10-28.csv
data/nowcasts/daily/2021-10-29.csv
data/nowcasts/daily/2021-10-30.csv
data/nowcasts/daily/2021-10-31.csv
data/nowcasts/daily/2021-11-01.csv
data/nowcasts/daily/2021-11-02.csv
data/nowcasts/daily/2021-11-03.csv
data/nowcasts/daily/2021-11-04.csv
data/nowcasts/daily/2021-11-05.csv
data/nowcasts/daily/2021-11-06.csv
data/nowcasts/daily/2021-11-07.csv
data/nowcasts/daily/2021-11-08.csv
data/nowcasts/daily/2021-11-09.csv
data/nowcasts/daily/2021-11-10.csv
data/nowcasts/daily/2021-11-11.csv
data/nowcasts/daily/2021-11-12.csv
data/nowcasts/daily/2021-11-13.csv
data/nowcasts/daily/2021-11-14.csv
data/nowcasts/daily/2021-11-15.csv
data/nowcasts/daily/2021-11-16.csv
data/nowcasts/daily/2021-11-17.csv
data/nowcasts/daily/2021-11-18.csv
data/nowcasts/daily/2021-11-19.csv
data/nowcasts/daily/2021-11-20.csv
data/nowcasts/daily/2021-11-21.csv
data/nowcasts/daily/2021-11-22.csv
data/nowcasts/daily/2021-11-23.csv
data/nowcasts/daily/2021-11-24.csv
data/nowcasts/daily/2021-11-25.csv
data/nowcasts/daily/2021-11-26.csv
data/nowcasts/daily/2021-11-27.csv
data/nowcasts/daily/2021-11-28.csv
data/nowcasts/daily/2021-11-29.csv
data/nowcasts/daily/2021-11-30.csv
data/nowcasts/daily/2021-12-01.csv
data/nowcasts/daily/2021-12-02.csv
data/nowcasts/daily/2021-12-03.csv
data/nowcasts/daily/2021-12-04.csv
data/nowcasts/daily/2021-12-05.csv
data/nowcasts/daily/2021-12-06.csv
data/nowcasts/daily/2021-12-07.csv
data/nowcasts/daily/2021-12-08.csv
data/nowcasts/daily/2021-12-09.csv
data/nowcasts/daily/2021-12-10.csv
data/nowcasts/daily/2021-12-11.csv
data/nowcasts/daily/2021-12-12.csv
data/nowcasts/daily/2021-12-13.csv
data/nowcasts/daily/2021-12-14.csv
data/nowcasts/daily/2021-12-15.csv
data/nowcasts/daily/2021-12-16.csv
data/nowcasts/daily/2021-12-17.csv
data/nowcasts/daily/2021-12-18.csv
data/nowcasts/daily/2021-12-19.csv
data/nowcasts/daily/2021-12-20.csv
data/nowcasts/daily/2021-12-21.csv
data/nowcasts/daily/2021-12-22.csv
data/nowcasts/daily/2021-12-23.csv
data/nowcasts/daily/2021-12-24.csv
data/nowcasts/daily/2021-12-25.csv
data/nowcasts/daily/2021-12-26.csv
data/nowcasts/daily/2021-12-27.csv
data/nowcasts/daily/2021-12-28.csv
data/nowcasts/daily/2021-12-29.csv
data/nowcasts/daily/2021-12-30.csv
data/nowcasts/daily/2021-12-31.csv
data/nowcasts/daily/2022-01-01.csv
data/nowcasts/daily/2022-01-02.csv
data/nowcasts/daily/2022-01-03.csv
data/nowcasts/daily/2022-01-04.csv
data/nowcasts/daily/2022-01-05.csv
data/nowcasts/daily/2022-01-06.csv
data/nowcasts/daily/2022-01-07.csv
data/nowcasts/daily/2022-01-08.csv
data/nowcasts/daily/2022-01-09.csv
data/nowcasts/daily/2022-01-10.csv
data/nowcasts/daily/2022-01-11.csv
data/nowcasts/daily/2022-01-12.csv
data/nowcasts/daily/2022-01-13.csv
data/nowcasts/daily/2022-01-14.csv
data/nowcasts/daily/2022-01-15.csv
data/nowcasts/daily/2022-01-16.csv
data/nowcasts/daily/2022-01-17.csv
data/nowcasts/daily/2022-01-18.csv
data/nowcasts/daily/2022-01-19.csv
data/nowcasts/daily/2022-01-20.csv
data/nowcasts/daily/2022-01-21.csv
data/nowcasts/daily/2022-01-22.csv
data/nowcasts/daily/2022-01-23.csv
data/nowcasts/daily/2022-01-24.csv
data/nowcasts/daily/2022-01-25.csv
data/nowcasts/daily/2022-01-26.csv
data/nowcasts/daily/2022-01-27.csv
data/nowcasts/daily/2022-01-28.csv
data/nowcasts/daily/2022-01-29.csv
data/nowcasts/daily/2022-01-30.csv
data/nowcasts/daily/2022-01-31.csv
data/nowcasts/daily/2022-02-01.csv
data/nowcasts/daily/2022-02-02.csv
data/nowcasts/daily/2022-02-03.csv
data/nowcasts/daily/2022-02-04.csv
data/nowcasts/daily/2022-02-05.csv
data/nowcasts/daily/2022-02-06.csv
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data/nowcasts/daily/2022-02-08.csv
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data/nowcasts/daily/2022-02-11.csv
data/nowcasts/daily/2022-02-12.csv
data/nowcasts/daily/2022-02-13.csv
data/nowcasts/daily/2022-02-14.csv
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data/nowcasts/daily/2022-02-19.csv
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data/nowcasts/daily/2022-04-27.csv
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data/nowcasts/daily/2022-05-27.csv
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data/nowcasts/seven_day/2021-10-01.csv
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