Files in epiforecasts/evaluate-delta-for-forecasting
Evaluating the impact of modelling strain dynamics on short-term COVID-19 forecast performance
.Rbuildignore
.Rprofile
.devcontainer/Dockerfile
.devcontainer/devcontainer.json
.devcontainer/library-scripts/common-debian.sh
.github/.gitignore
.github/workflows/paper.yaml
.gitignore
.lintr
.pre-commit-config.yaml
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/model-score-evaluation.R
R/sbc.R
R/utils.R
R/validation.R
README.md
_targets.R
_targets.sh
analyses/README.md
analyses/model-evaluation.R
analyses/model-score-evaluation.R
data-raw/observations/covariants.org/process-obs.Rmd
data-raw/observations/covariants.org/process-obs.md
data-raw/observations/covariants.org/process-obs_files/figure-gfm/cases-1.png
data-raw/observations/covariants.org/process-obs_files/figure-gfm/first-share-voc-1.png
data-raw/observations/covariants.org/process-obs_files/figure-gfm/latest-share-voc-1.png
data-raw/observations/covariants.org/process-obs_files/figure-gfm/normalised-by-max-1.png
data-raw/observations/covariants.org/process-obs_files/figure-gfm/rki-vs-covariants-cases-1.png
data-raw/observations/covariants.org/process-obs_files/figure-gfm/sequences-change-1.png
data-raw/observations/covariants.org/process-obs_files/figure-gfm/share-voc-by-avail-1.png
data-raw/observations/rki/process-obs.Rmd
data-raw/observations/rki/process-obs.md
data-raw/observations/rki/process-obs_files/figure-gfm/cases-1.png
data-raw/observations/rki/process-obs_files/figure-gfm/sequences-1.png
data-raw/observations/rki/process-obs_files/figure-gfm/sequences-change-1.png
data/README.md
data/observations/covariants.csv
data/observations/rki.csv
figures/validation/single_posterior_prediction.png
figures/validation/single_prior_prediction.png
figures/validation/two_cases_posterior_overdispersion_prediction.png
figures/validation/two_cases_posterior_prediction.png
figures/validation/two_cases_prior_overdispersion_prediction.png
figures/validation/two_cases_prior_prediction.png
figures/validation/two_voc_posterior_overdispersion_prediction.png
figures/validation/two_voc_posterior_prediction.png
figures/validation/two_voc_prior_overdispersion_prediction.png
figures/validation/two_voc_prior_prediction.png
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
targets/README.md
targets/forecast.R
targets/meta.R
targets/observations.R
targets/sbc.R
targets/scenario_forecast.R
targets/scenarios.R
targets/score_forecasts.R
targets/summarise_forecasts.R
targets/summarise_sources.R
targets/validation.R
writeup/.gitignore
writeup/library.bib
writeup/paper.Rmd
writeup/si.Rmd
