Files in epirhandbook/handbookfiles
Data Used in The Epidemiology R Handbook
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENCE.md
NAMESPACE
R/download_book.R
R/get_data.R
R/handbookfiles-package.R
README.Rmd
README.md
epirhandbook.Rproj
inst/extdata/cache/epidemic_models/2015-04-30/estimate_samples.rds
inst/extdata/cache/epidemic_models/2015-04-30/estimated_reported_cases_samples.rds
inst/extdata/cache/epidemic_models/2015-04-30/latest_date.rds
inst/extdata/cache/epidemic_models/2015-04-30/reported_cases.rds
inst/extdata/cache/epidemic_models/2015-04-30/summarised_estimated_reported_cases.rds
inst/extdata/cache/epidemic_models/2015-04-30/summarised_estimates.rds
inst/extdata/cache/epidemic_models/2015-04-30/summary.rds
inst/extdata/cache/epidemic_models/epinow_res.rds
inst/extdata/cache/epidemic_models/epinow_res_small.rds
inst/extdata/cache/epidemic_models/generation_time.rds
inst/extdata/cache/epidemic_models/incubation_period.rds
inst/extdata/campylobacter_germany.xlsx
inst/extdata/case_linelists/cleaning_dict.csv
inst/extdata/case_linelists/linelist_cleaned.rds
inst/extdata/case_linelists/linelist_cleaned.xlsx
inst/extdata/case_linelists/linelist_raw.xlsx
inst/extdata/example/Central Hospital.csv
inst/extdata/example/Military Hospital.csv
inst/extdata/example/Missing.csv
inst/extdata/example/Other.csv
inst/extdata/example/Port Hospital.csv
inst/extdata/example/St. Mark's Maternity Hospital (SMMH).csv
inst/extdata/example/district_weekly_count_data.xlsx
inst/extdata/example/fluH7N9_China_2013.csv
inst/extdata/example/hospital_linelists.xlsx
inst/extdata/example/linelists/20201007linelist.csv
inst/extdata/example/linelists/case_linelist20201006.csv
inst/extdata/example/linelists/case_linelist_2020-10-02.csv
inst/extdata/example/linelists/case_linelist_2020-10-03.csv
inst/extdata/example/linelists/case_linelist_2020-10-04.csv
inst/extdata/example/linelists/case_linelist_2020-10-05.csv
inst/extdata/example/linelists/case_linelist_2020-10-08.xlsx
inst/extdata/flexdashboard/outbreak_dashboard.Rmd
inst/extdata/flexdashboard/outbreak_dashboard_test.Rmd
inst/extdata/flexdashboard/outbreak_dashboard_test.html
inst/extdata/gis/africa_countries.geo.json
inst/extdata/gis/covid_incidence.csv
inst/extdata/gis/covid_incidence_map.R
inst/extdata/gis/linelist_cleaned_with_adm3.rds
inst/extdata/gis/population/sle_admpop_adm3_2020.csv
inst/extdata/gis/population/sle_population_statistics_sierraleone_2020.xlsx
inst/extdata/gis/shp/README.txt
inst/extdata/gis/shp/sle_adm3.CPG
inst/extdata/gis/shp/sle_adm3.dbf
inst/extdata/gis/shp/sle_adm3.prj
inst/extdata/gis/shp/sle_adm3.sbn
inst/extdata/gis/shp/sle_adm3.sbx
inst/extdata/gis/shp/sle_adm3.shp
inst/extdata/gis/shp/sle_adm3.shp.xml
inst/extdata/gis/shp/sle_adm3.shx
inst/extdata/gis/shp/sle_hf.CPG
inst/extdata/gis/shp/sle_hf.dbf
inst/extdata/gis/shp/sle_hf.prj
inst/extdata/gis/shp/sle_hf.sbn
inst/extdata/gis/shp/sle_hf.sbx
inst/extdata/gis/shp/sle_hf.shp
inst/extdata/gis/shp/sle_hf.shx
inst/extdata/likert_data.csv
inst/extdata/linelist_cleaned.xlsx
inst/extdata/make_evd_dataset.R
inst/extdata/malaria_facility_count_data.rds
inst/extdata/phylo/Shigella_subtree_2.nwk
inst/extdata/phylo/Shigella_subtree_2.txt
inst/extdata/phylo/Shigella_tree.txt
inst/extdata/phylo/sample_data_Shigella_tree.csv
inst/extdata/standardization/country_demographics.csv
inst/extdata/standardization/country_demographics_2.csv
inst/extdata/standardization/world_standard_population_by_sex.csv
inst/extdata/weather/germany_weather2002.nc
inst/extdata/weather/germany_weather2003.nc
inst/extdata/weather/germany_weather2004.nc
inst/extdata/weather/germany_weather2005.nc
inst/extdata/weather/germany_weather2006.nc
inst/extdata/weather/germany_weather2007.nc
inst/extdata/weather/germany_weather2008.nc
inst/extdata/weather/germany_weather2009.nc
inst/extdata/weather/germany_weather2010.nc
inst/extdata/weather/germany_weather2011.nc
inst/file_lookup.R
inst/file_lookup.rds
man/download_book.Rd
man/epirhandbook-package.Rd
man/get_data.Rd
